Single miRNA

Atr-MIR1432a

Basic info.

miRNA locus ID
Atr-MIR1432a

Organism
Amborella trichopoda

Genomic location
AmTr_v1.0_scaffold00108 1352012 1352111 -

Comments
A member of MIR1432

Confidence level

Secondary structure and sequence

mature sequence star sequence

5'

3'

 ATGA   T    -C    T   C                    ---A  TC
     GAT GGAT  TCCC GCT AGGAGAGATGATGCCGGCCA    TC  
     ||| ||||  |||| ||| ||||||||||||||||||||    ||  T
     CTA CCTA  AGGG CGG TCTTCTCTACTACGGCCGGT    AG  
ACACA   C    CC    C   A                    ACAC  TC

Get mature sequence
Get star sequence
Get miRNA stem-loop sequence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
evm_27.model.AmTr_v1.0_scaffold00029.340	2.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.364	2.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.24	2.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00130.33	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.10	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.50	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00088.16	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00036.194	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00155.49	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00034.90	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00207.3	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.195	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00235.5	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00105.23	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00114.38	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.430	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00068.12	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.367	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00072.71	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.222	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00264.3	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.288	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.359	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.117	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00055.91	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00071.33	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00142.40	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.218	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00090.82	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00139.16	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00013.269	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00078.6	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.205	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00043.39	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.238	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00142.69	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.82	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00063.58	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00078.79	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00005.188	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00092.16	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00088.131	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.331	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.236	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.142	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00131.27	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00174.9	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.396	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.124	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.334	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00026.16	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00008.184	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00083.32	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.160	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.97	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.30	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.79	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00078.198	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00053.172	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.383	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.277	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00013.158	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00047.76	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.244	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.105	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00070.48	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.56	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00064.52	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00014.135	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00046.122	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.158	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00090.23	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00095.63	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold01245.2	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.377	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00166.30	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00268.1	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.128	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.141	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.10	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00159.15	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.202	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.266	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00078.198	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.2	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00148.5	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.228	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.375	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.129	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.42	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00095.115	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00036.161	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00155.17	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00013.133	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.281	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold02859.1	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.228	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.321	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00589.1	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00092.20	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.518	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00085.97	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.138	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.336	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00064.56	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00042.3	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00008.112	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.255	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.305	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.213	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00005.56	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00152.3	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00034.35	5	NA	NA