Single miRNA

Atr-MIR1516a

Basic info.

miRNA locus ID
Atr-MIR1516a

Organism
Amborella trichopoda

Genomic location
AmTr_v1.0_scaffold00004 5825329 5825449 -

Comments
A member of MIR1516

Confidence level

Secondary structure and sequence

mature sequence star sequence

5'

3'

  GCTGATTCACCGATCCGA          C       A        T        TTTTG
                    GGCACCGATC GTTTTTT AACCATTG TTAAACGA     
                    |||||||||| ||||||| |||||||| ||||||||     T
                    CCGTGGCTAG CAAAAAA TTGGTGAC AATTTGTT     
AAAACCTCACGAGTTAGACC          A       C        C        TTTGG

Get mature sequence
Get star sequence
Get miRNA stem-loop sequence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
evm_27.model.AmTr_v1.0_scaffold00016.154	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00152.5	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.571	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00068.175	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00030.213	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold01742.1	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.172	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.225	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00126.49	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.264	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00121.18	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.13	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.185	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00102.29	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00095.50	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.571	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.560	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00072.47	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.93	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00078.143	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00165.15	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00142.37	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00055.6	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.97	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00085.93	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00104.64	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00042.2	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.92	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.18	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.58	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.198	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.90	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.124	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.12	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.147	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.64	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.447	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00112.4	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00182.5	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.11	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00014.148	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00135.67	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00101.97	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00115.6	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00052.53	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00154.5	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00114.51	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.418	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.113	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00038.160	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00046.1	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00030.109	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00143.19	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00053.139	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00067.5	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.256	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.261	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.295	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00099.60	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.30	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.124	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.454	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00038.110	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.169	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.102	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00047.49	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.15	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00077.82	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.468	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.244	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00068.81	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.71	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00055.165	5	NA	NA