Single miRNA

Atr-MIR1516b

Basic info.

miRNA locus ID
Atr-MIR1516b

Organism
Amborella trichopoda

Genomic location
AmTr_v1.0_scaffold00048 2963772 2963896 -

Comments
A member of MIR1516

Confidence level

Secondary structure and sequence

mature sequence star sequence

5'

3'

  GAC   T   T   T    ACTC        T     C     G       CGATCTCTCT
     CGA GGC TAC TTTT    TGTTGTTG GAGAA AAAAT GGAATCC          
     ||| ||| ||| ||||    |||||||| ||||| ||||| |||||||          A
     GTT TCG ATG AAAA    ACAACAAC CTCTT TTTTA CTTTAGG          
CACAA   T   C   T    GAAT        T     C     A       TTAACAACTA

Get mature sequence
Get star sequence
Get miRNA stem-loop sequence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
evm_27.model.AmTr_v1.0_scaffold00002.65	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.112	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.93	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00011.172	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00076.56	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00050.30	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.429	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00077.18	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00161.13	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00077.177	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.345	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.83	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00011.173	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00067.92	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00158.1	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00082.3	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.103	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.268	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.22	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold01110.2	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00060.152	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00070.13	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.422	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.181	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00030.55	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.118	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00135.46	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.40	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.45	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00015.26	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00103.84	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.60	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00020.34	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00120.17	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.97	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00082.20	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.49	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.79	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00053.23	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.288	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.50	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.364	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.33	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00071.190	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00126.18	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.255	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00086.27	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.32	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.141	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.220	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00157.12	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00146.45	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.383	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00202.13	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00036.179	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.126	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.390	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.188	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00073.40	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00126.22	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00068.177	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.243	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00076.57	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00095.99	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00072.114	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00078.86	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00092.61	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00047.130	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.303	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00111.28	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00047.22	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.238	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00096.119	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00078.151	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00082.23	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.246	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00013.139	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00078.25	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.130	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00037.91	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00137.10	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00020.129	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00169.19	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.218	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.264	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.57	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.154	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00131.35	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.339	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00119.95	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.172	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.102	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.131	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.140	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00104.37	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00088.152	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.332	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.142	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00046.99	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00070.18	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00046.101	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00135.46	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00095.11	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00067.66	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.12	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.134	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.93	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.117	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00047.154	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00030.171	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.398	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00117.48	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.601	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.7	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold05536.1	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.268	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00160.21	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.406	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.140	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.207	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.179	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00077.24	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.95	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.74	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.246	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.378	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00026.56	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00026.56	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.38	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00037.91	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.171	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.276	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.77	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00073.54	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.110	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.96	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00037.160	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00014.45	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00067.172	5	NA	NA