Single miRNA

Atr-MIR156a

Basic info.

miRNA locus ID
Atr-MIR156a

Organism
Amborella trichopoda

Genomic location
AmTr_v1.0_scaffold00044 4041321 4041446 +

Comments
A member of MIR156

Confidence level

Secondary structure and sequence

mature sequence star sequence

5'

3'

     AGAGA  -    CT    TTGT         -A             --      C      TGG
          GG GGGT  GGTG    TGACAGAAG  TAGAGAGCACATA  AAGTAA GTGCAG   
          || ||||  ||||    |||||||||  |||||||||||||  |||||| ||||||   G
          CC CTCG  CCAC    ACTGTCTTC  ATCTCTCGTGTAT  TTTATT TACGTT   
CCCACCCTTA  A    -T    ---T         CG             GT      T      TGC

Get mature sequence
Get star sequence
Get miRNA stem-loop sequence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
evm_27.model.AmTr_v1.0_scaffold00022.228	1.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00013.75	1.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00106.115	2.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.295	2.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00047.125	2.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.235	2.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.407	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00046.85	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00235.3	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.74	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00013.78	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00035.6	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.309	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00018.84	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.60	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.78	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00084.50	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00126.57	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.76	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00055.74	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00103.53	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.303	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00103.118	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.36	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00053.28	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.118	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold01206.1	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold02229.1	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00102.72	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00020.95	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00031.55	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00103.49	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.210	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00106.8	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00050.68	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00032.34	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00108.20	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00074.6	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.125	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.9	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00105.66	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00053.118	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00062.39	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00177.30	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.331	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00129.22	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.385	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00113.5	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.146	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00170.11	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.134	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00080.75	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00089.69	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00202.16	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.142	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00085.83	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00153.14	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00137.54	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.188	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.173	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.461	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.355	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00055.175	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.31	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.31	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.269	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00036.183	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00149.49	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00149.49	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.206	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.501	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.271	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00080.36	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.192	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.271	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.116	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00103.41	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.82	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.235	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00103.118	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.133	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00091.39	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold01296.1	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold03205.1	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00227.4	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00078.113	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00227.3	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.39	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.205	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.269	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00015.28	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.206	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.284	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00197.18	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00038.155	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.543	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.151	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00111.118	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00032.125	5	NA	NA