Atr-MIR156b

Basic info.

• miRNA locus ID
• Atr-MIR156b

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold00053  805747  805954  +

• Comments
• A member of MIR156

• Confidence level
• 

Secondary structure and sequence

     -TCCA      -C                     CTC    T     T         G   G  G    C        T   A    C   -GAA   GTC
GAAGT     GGTTGG  AAGGGAGCTCTCTTCAGTCCA   ATGG TGGCA GAGGGTTGG TTG CT CCGT TCATTCAT CAA TGCT AGT    TTT   
|||||     ||||||  |||||||||||||||||||||   |||| ||||| ||||||||| ||| || |||| |||||||| ||| |||| |||    |||    
CTTCG     TTAGTC  TTCCCTCGAGGGAAGTCAGGT   TATC ACCGT TTCTTAGCT GAC GA GGCG AGTAAGTG GTT ATGA TCA    AAA   
     TATTA      TC                     TCT    T     -         A   A  G    T        T   A    C   ATCG   GAA

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop sequence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

No miRNA locus in ± 10k bp interval.

Target gene info.[+]