Atr-MIR156e

Basic info.

• miRNA locus ID
• Atr-MIR156e

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold00079  1172805  1173107  -

• Comments
• A member of MIR156

• Confidence level
• 

Secondary structure and sequence

      G   T      -------         A             -    A C  A       ---TTAA    G   CC      A  C A     CTTATAACATC    ----- CGTCGTCATCGTGATCGTCGTCAAGGTCATCACCATGTAGTCGTGG
     A TTA GGGAAA       GGGAGCTCC TTCGGTCCAATCT TGGG G GA GAGGCGG       AGCT CCA  CCATGC TC G CTAGC           ATGA     T                                              
     | ||| ||||||       ||||||||| ||||||||||||| |||| | || |||||||       |||| |||  |||||| || | |||||           ||||     |                                              T
     T AGT CTCTTT       CCCTCGAGG AAGTCAGGTTAGG ACCT C CT TTTCGCC       TCGA GGT  GGTACG AG C GATCG           ATAG     G                                              
ATTTA G   -      TAACATC         G             C    A -  C       TCCTTTA    G   AT      G  A C     ----------A    AGATA AGAAGTACAAGTATTACCTCTAGTACAACTCCTACGCTGTAACTAC

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop sequence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

No miRNA locus in ± 10k bp interval.

Target gene info.[+]