Single miRNA

Atr-MIR156h

Basic info.

miRNA locus ID
Atr-MIR156h

Organism
Amborella trichopoda

Genomic location
AmTr_v1.0_scaffold00105 1160443 1160654 +

Comments
A member of MIR156

Confidence level

Secondary structure and sequence

mature sequence star sequence

5'

3'

    TTGT    TTT       A                   TC     T  CA  T      A  GCT   G   G  C     C      T       A     GTTT
        GGGG   GGGGGGA GGAGCTCTCTTCAGTCCAG  TAGGA GG  GT CGATCG AT   GCT CCG GT CTTCT TTATAA GCCTTTG TTTTT    
        ||||   ||||||| |||||||||||||||||||  ||||| ||  || |||||| ||   ||| ||| || ||||| |||||| ||||||| |||||     
        CCTC   TTCTTCT CCTCGAGGGAAGTCAGGTT  GTTCT CC  CA GTTGGT TA   CGA GGC CA GAAGA AGTGTT CGGAAGC AAGGA    
AACTTCCT    --T       C                   CC     T  -C  -      C  AGT   G   G  T     T      T       A     AAAG

Get mature sequence
Get star sequence
Get miRNA stem-loop sequence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
evm_27.model.AmTr_v1.0_scaffold00038.91	1.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00092.72	2.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00037.85	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.111	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00130.32	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.197	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.70	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.270	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00148.35	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.132	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.269	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00062.121	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00142.69	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00097.26	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.294	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00120.45	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00091.13	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00149.38	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00068.103	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00153.31	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.134	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00085.40	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00162.29	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.118	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.194	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00005.10	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00268.6	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.18	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00060.110	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.263	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.333	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00102.25	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.244	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.171	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.1	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00135.4	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.73	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.118	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00165.1	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00072.24	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00031.113	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.593	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.185	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00177.4	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.356	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00053.155	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00053.155	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00149.25	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.59	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00175.23	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00034.133	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00129.39	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00060.6	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.63	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.382	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.220	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00095.14	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00169.29	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.54	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.426	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00043.64	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.332	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.166	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.214	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.299	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.272	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00111.43	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.213	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00043.12	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00149.39	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00077.115	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.371	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.41	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.222	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00191.2	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00035.40	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.61	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.42	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.163	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00078.205	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00053.43	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00107.33	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.173	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.147	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00078.160	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.117	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00117.66	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00110.97	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.75	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00078.14	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.195	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00050.48	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00218.8	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00071.141	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00156.35	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00068.92	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.68	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.153	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.187	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.163	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00027.96	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.198	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00078.202	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.26	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00060.5	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00060.5	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.219	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.332	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00063.23	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00013.162	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.269	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00198.5	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.151	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.154	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00050.33	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00032.122	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00013.219	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.23	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00092.160	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00075.12	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00053.2	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.212	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.566	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00034.84	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00122.10	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.215	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.178	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00122.33	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.182	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.269	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.259	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.185	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.238	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00079.83	5	NA	NA