Single miRNA

Atr-MIR156k

Basic info.

miRNA locus ID
Atr-MIR156k

Organism
Amborella trichopoda

Genomic location
AmTr_v1.0_scaffold00188 77611 77733 -

Comments
A member of MIR156

Confidence level

Secondary structure and sequence

mature sequence star sequence

5'

3'

           -   A   GCAAAAA             G  GA     ----    CACTTTGGATCGTC
        AAG GAA AAT       TGGGAGCTCCTTT AG  CAAAG    AAAG              
        ||| ||| |||       ||||||||||||| ||  |||||    ||||              T
        TTC CTT TTA       ATCCTCGAGGGAA TC  GTTTC    TGAG              
TCCTATTT   T   C   -------             G  AG     CTAC    AAGTTACTCGTTTT

Get mature sequence
Get star sequence
Get miRNA stem-loop sequence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
evm_27.model.AmTr_v1.0_scaffold00038.91	2.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00062.121	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00120.45	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00091.13	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00162.29	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00060.110	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00092.72	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00130.32	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.270	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00072.24	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.197	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.118	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00097.26	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.42	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.382	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00119.107	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold03018.1	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00102.25	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00037.85	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.111	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00149.38	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00148.35	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00053.43	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.118	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.194	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.163	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00005.10	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.294	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00060.5	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00060.5	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.185	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.178	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.182	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.171	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.332	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00173.15	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00043.64	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00047.146	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.154	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.212	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.59	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00165.18	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00155.28	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00148.35	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.70	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.336	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.269	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.163	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00092.149	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00046.171	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00182.5	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00119.64	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.213	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00043.12	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00149.39	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.198	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00031.113	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00123.5	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00126.22	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00050.33	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00126.18	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.123	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00013.219	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.139	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00026.22	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.267	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00177.4	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.332	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00243.2	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00053.155	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.118	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00133.17	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.333	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.272	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00107.33	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00068.103	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00030.123	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.132	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00092.75	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.1	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.106	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.219	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.263	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00153.31	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.244	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00149.25	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.173	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00142.69	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.74	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.74	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00034.84	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00175.23	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00135.4	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.356	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.159	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00018.19	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.185	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00085.40	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00030.92	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.27	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00063.23	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.166	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00018.3	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00011.75	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.71	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.112	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.112	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00005.72	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.117	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.219	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00117.66	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00110.24	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00268.6	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00111.43	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.415	5	NA	NA