Atr-MIR156m

Basic info.

• miRNA locus ID
• Atr-MIR156m

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold00701  6426  6549  -

• Comments
• A member of MIR156

• Confidence level
• 

Secondary structure and sequence

  TT      TT   A  A       -      G  GA     -AAA  -A      ATC  CTT
    GGAAAA  GAA AA TGGGAGC CCTTTT AG  CAAAG    GC  TTTCGA   GT   
    ||||||  ||| || ||||||| |||||| ||  |||||    ||  ||||||   ||    
    TCTTTT  CTT TT ACCCTCG GGGAAG TC  GTTTC    CG  GAAGTT   CG   
CCCT      CT   C  A       A      -  AG     CTAC  AC      ACT  TTT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop sequence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

No miRNA locus in ± 10k bp interval.

Target gene info.[+]