Single miRNA

Atr-MIR156o

Basic info.

miRNA locus ID
Atr-MIR156o

Organism
Amborella trichopoda

Genomic location
AmTr_v1.0_scaffold00065 3401555 3401676 -

Comments
A member of MIR156

Confidence level

Secondary structure and sequence

mature sequence star sequence

5'

3'

AAGGG         TT  ------       -      -         A     C  ATT     AC
     GGTAGTGGG  AT      GCTGACA GAAGAG AGTGAGCAC CATGG CA   GTATA  
     |||||||||  ||      ||||||| |||||| ||||||||| ||||| ||   |||||   
     TTATCGCCC  TA      CGACTGT CTTCTC TCACTCGTG GTGTC GT   CGTAT  
    G         TT  CTATTT       T      C         C     T  CGC     GC

Get mature sequence
Get star sequence
Get miRNA stem-loop sequence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
evm_27.model.AmTr_v1.0_scaffold00106.115	1	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.228	1	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.295	1	NA	NA
evm_27.model.AmTr_v1.0_scaffold00013.75	1	NA	NA
evm_27.model.AmTr_v1.0_scaffold00047.125	1	NA	NA
evm_27.model.AmTr_v1.0_scaffold00197.18	2.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00194.23	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00235.3	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00020.95	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00011.159	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00105.16	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00047.62	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00075.14	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00077.199	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00088.72	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00145.2	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00107.29	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.437	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.216	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00046.85	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00156.46	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.235	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.251	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.159	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.224	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.63	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00177.8	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.264	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold02405.1	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.99	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.76	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00099.57	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00130.39	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.121	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00156.14	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.442	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.193	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00053.50	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.59	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.388	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00068.80	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00088.157	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.210	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00360.2	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00360.2	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.157	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00096.87	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00011.166	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.137	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold05727.1	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00077.229	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.44	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00095.125	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00095.118	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00051.38	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.200	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00047.50	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.234	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.211	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00111.2	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.262	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.329	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00130.33	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00165.29	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00162.29	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.132	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.269	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00105.66	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.331	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00080.77	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00142.9	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00085.83	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00046.144	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00099.10	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.181	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.155	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00113.18	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.402	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00053.106	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.359	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.228	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.156	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00099.43	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00073.44	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00091.37	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00074.76	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00110.93	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.148	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00015.13	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00030.186	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00037.107	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.246	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00005.50	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.41	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.27	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.33	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00137.54	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00055.70	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00324.1	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00169.46	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00193.9	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00122.12	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold05100.1	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.219	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.219	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.407	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.550	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00154.61	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.119	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00145.29	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00096.88	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00129.29	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.283	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.180	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00027.47	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.418	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.147	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00060.8	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.153	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.258	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.275	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00113.18	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00113.18	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00068.153	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.191	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.183	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00034.99	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00034.99	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.77	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00052.121	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.25	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00005.197	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00085.26	5	NA	NA