Atr-MIR157a

Basic info.

• miRNA locus ID
• Atr-MIR157a

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold00105  1236880  1237093  -

• Comments
• A member of MIR157

• Confidence level
• 

Secondary structure and sequence

     -T    TT TTG              GA       T C   -T      TT      -  -      G  A T     G TC       GT        AATATA
 TTTG  AGGG  G   ACATGGAGCTCCTT  GGTCCAA C AGG  TCTTAC  AGGTAA AA GCAGCT CT G TCATG A  CCACTGT  TATTTCCA      
 ||||  ||||  |   ||||||||||||||  ||||||| | |||  ||||||  |||||| || |||||| || | ||||| |  |||||||  ||||||||       
 GAAC  TCCC  C   TGTATCTCGAGGGA  TTAGGTT G TCC  AGAGTG  TCCGTT TT CGTCGA GA C AGTAC T  GGTGGTA  ATAGAGGT      
C    CT    CT TTG              AG       T T   TT      -T      C  A      G  A C     G TT       AT        AAGAGA

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop sequence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

No miRNA locus in ± 10k bp interval.

Target gene info.[+]