Single miRNA

Atr-MIR164a

Basic info.

miRNA locus ID
Atr-MIR164a

Organism
Amborella trichopoda

Genomic location
AmTr_v1.0_scaffold00007 3789215 3789369 +

Comments
A member of MIR164

Confidence level

Secondary structure and sequence

mature sequence star sequence

5'

3'

  GGGTTTGGGTGCTT  TC          CA         C        T       CCTTTGAAGATGAAGAAAAA
                GC  GATGGAGAAG  GGGCACGTG ATTACAAA CCATCTT                    
                ||  ||||||||||  ||||||||| |||||||| |||||||                    G
                CG  CTACCTCTTC  TCCGTGTAC TGGTGTTT GGTGGGA                    
ACTCCAAGTTACTCCT  TA          TA         T        T       ATGTAAAGTGATGAAAAGAA

Get mature sequence
Get star sequence
Get miRNA stem-loop sequence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
evm_27.model.AmTr_v1.0_scaffold00058.98	0.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00092.111	1	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.523	2	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.194	2	NA	NA
evm_27.model.AmTr_v1.0_scaffold00112.21	2.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.293	2.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.299	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.296	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00099.41	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00102.35	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.33	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.243	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.297	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00131.44	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00011.128	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.157	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.153	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00053.101	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00034.69	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00038.219	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00099.133	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.159	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00095.30	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00163.28	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00070.125	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00055.125	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold01475.1	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00034.31	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.180	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.426	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.291	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.216	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00160.24	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00163.23	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00612.2	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00038.116	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.163	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.262	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00119.25	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.360	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00099.55	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00026.36	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.90	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00038.91	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.61	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00067.7	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.28	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.503	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00136.14	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.228	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00171.38	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00052.74	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.47	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00032.36	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00011.127	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00047.163	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.169	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00042.61	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00005.197	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.310	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.106	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.292	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00135.59	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00135.59	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00014.69	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00117.67	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.420	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00055.17	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.185	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.185	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.333	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00055.178	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00055.178	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00068.53	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.35	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.214	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.213	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00050.25	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.279	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00118.14	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.18	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.117	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00148.60	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.481	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00068.67	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.318	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.318	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold02163.1	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.273	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00178.8	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00080.21	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00078.139	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00074.99	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.149	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00008.174	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.37	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00089.22	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.138	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.289	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00005.1	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.205	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00051.78	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.300	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00068.91	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00047.12	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00175.33	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00440.1	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00135.59	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.39	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.185	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00055.178	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00014.10	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00046.102	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00129.39	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.359	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00068.139	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00018.115	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00088.107	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00036.108	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00122.49	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00028.138	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00062.124	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00132.9	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.263	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.55	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.171	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.164	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold01333.1	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00209.9	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.294	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.253	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00036.183	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.85	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.149	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.185	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.355	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00013.16	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00037.72	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00322.3	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.346	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.92	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00027.73	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.109	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.427	5	NA	NA