Single miRNA

Atr-MIR165a

Basic info.

miRNA locus ID
Atr-MIR165a

Organism
Amborella trichopoda

Genomic location
AmTr_v1.0_scaffold00002 8188975 8189091 +

Comments
A member of MIR165

Confidence level

Secondary structure and sequence

mature sequence star sequence

5'

3'

  ACATGGGCTTG      A        TT             -  A     --C   TAT
             GGGTTG GGGGAATG  GTCTGGTTCGAAA CC TTTTG   GAT   
             |||||| ||||||||  ||||||||||||| || |||||   |||   A
             TCCAAC CCCCTTAC  CGGACCAGGCTTT GG AAAGC   CTA   
GTCTAAAAGAACT      C        TT             A  -     TAT   CCT

Get mature sequence
Get star sequence
Get miRNA stem-loop sequence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
evm_27.model.AmTr_v1.0_scaffold00128.10	0	NA	NA
evm_27.model.AmTr_v1.0_scaffold00148.15	1	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.60	1	NA	NA
evm_27.model.AmTr_v1.0_scaffold00155.45	1	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.230	1.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.203	2.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.215	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00154.11	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00067.69	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.194	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00085.15	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00108.4	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.178	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00028.102	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00014.130	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00090.66	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.255	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00072.16	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.373	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.119	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.30	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.114	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00071.150	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00062.120	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00102.25	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00322.3	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00155.62	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00100.46	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.272	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00111.118	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.177	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00088.116	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.287	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00121.24	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00036.175	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.76	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00092.144	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.15	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.86	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00078.160	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00110.111	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.239	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.141	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.188	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.388	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00064.106	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00141.1	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.29	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00110.46	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.13	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00131.44	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00159.11	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00068.98	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.439	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.71	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00074.10	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00102.73	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.170	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.1	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00105.73	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.273	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00038.51	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00108.35	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00131.42	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00032.145	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.400	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00023.198	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.78	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.216	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00175.11	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.96	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00078.81	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00149.13	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.179	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.164	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.143	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00138.19	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00020.92	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.1	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00020.34	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.220	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00020.33	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.319	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00089.62	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00081.76	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00080.22	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00053.161	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00011.171	5	NA	NA