Single miRNA

Atr-MIR165c

Basic info.

miRNA locus ID
Atr-MIR165c

Organism
Amborella trichopoda

Genomic location
AmTr_v1.0_scaffold00078 1243590 1243725 -

Comments
A member of MIR165

Confidence level

Secondary structure and sequence

mature sequence star sequence

5'

3'

 CA       TC    -C           G       A      -   TCCCGCACCTT    CCCTT  TTC
   GAAGAAA  AATG  AAGGAATGAAG TTGATCC AGATCA TGG           GTTC     GT   
   |||||||  ||||  ||||||||||| ||||||| |||||| |||           ||||     ||    
   CTTCTTT  TTAC  TTCCTTACTTC GACTAGG TCTAGT ACC           CGAG     CG   
CCA       TA    AT           G       C      T   ------CTCTT    -TTAT  TAC

Get mature sequence
Get star sequence
Get miRNA stem-loop sequence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
evm_27.model.AmTr_v1.0_scaffold00128.10	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00108.28	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00074.128	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.293	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00322.3	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00148.15	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.60	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00155.45	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.203	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.179	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.216	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.48	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00111.118	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.207	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.191	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.201	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00105.73	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.16	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.114	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.292	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.152	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00111.2	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00078.29	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00078.28	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00067.229	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00131.27	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.230	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.132	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.132	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00077.188	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.86	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.273	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.179	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00131.42	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00067.69	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00037.126	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.76	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00102.25	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.217	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00026.108	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.78	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.144	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.62	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.33	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00008.75	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.251	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00053.56	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.186	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00013.282	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00023.248	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.57	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.4	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.63	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00109.62	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.164	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00090.53	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.138	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00101.136	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.39	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.116	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00036.83	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.129	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.176	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.335	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.177	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00129.39	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.217	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00055.13	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00141.1	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00074.14	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00063.50	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.180	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00106.40	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.76	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00090.66	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00154.11	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.651	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00079.34	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00038.65	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00034.77	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00111.49	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.278	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.118	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00122.49	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00092.100	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00089.19	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.114	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00119.69	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00130.43	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00118.8	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00089.52	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00145.4	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.136	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.139	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00071.35	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.218	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.441	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00085.23	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00086.17	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.292	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.387	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00096.4	5	NA	NA