Atr-MIR167a

Basic info.

• miRNA locus ID
• Atr-MIR167a

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold00002  9895608  9895716  -

• Comments
• A member of MIR167

• Confidence level
• 

Secondary structure and sequence

G  ---T      C     G  T         CA            CCCTCC    AAA
 AT    TGTGAG ATCAG GG TGAAGCTGC  GCATGATCTGAT      TCTA   
 ||    |||||| ||||| || |||||||||  ||||||||||||      ||||    
 TA    ACGTTC TGGTC CC ACTTTGACG  CGTACTAGACTA      AGAT   
   TGTC      T     G  T         AG            -----A    CCC

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop sequence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

No miRNA locus in ± 10k bp interval.

Target gene info.[+]