Single miRNA

Atr-MIR167a

Basic info.

miRNA locus ID
Atr-MIR167a

Organism
Amborella trichopoda

Genomic location
AmTr_v1.0_scaffold00002 9895608 9895716 -

Comments
A member of MIR167

Confidence level

Secondary structure and sequence

mature sequence star sequence

5'

3'

G  ---T      C     G  T         CA            CCCTCC    AAA
 AT    TGTGAG ATCAG GG TGAAGCTGC  GCATGATCTGAT      TCTA   
 ||    |||||| ||||| || |||||||||  ||||||||||||      ||||    
 TA    ACGTTC TGGTC CC ACTTTGACG  CGTACTAGACTA      AGAT   
   TGTC      T     G  T         AG            -----A    CCC

Get mature sequence
Get star sequence
Get miRNA stem-loop sequence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
evm_27.model.AmTr_v1.0_scaffold00177.25	2.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00075.7	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.100	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.91	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00062.56	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.187	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00092.36	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00084.6	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00077.169	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.20	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00060.35	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00138.5	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.150	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00165.4	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00164.11	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00093.13	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00038.3	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00116.46	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.82	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.15	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00153.16	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.204	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00176.10	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00023.215	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00077.237	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00209.8	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.231	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.166	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00080.63	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00116.40	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.119	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.385	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.262	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00080.12	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00013.13	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.180	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.533	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.147	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00095.69	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00092.96	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00095.85	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.73	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.28	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00067.88	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00023.200	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.195	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00099.83	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.281	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.171	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.231	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00032.40	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00051.9	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00093.5	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00162.9	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.67	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.93	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00218.6	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00179.8	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00108.6	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00078.36	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00102.10	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.106	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.184	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.212	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00140.6	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00020.98	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.188	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00013.171	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00103.1	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00008.70	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00043.80	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00063.3	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00042.76	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.185	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.219	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.109	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00030.12	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00030.17	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.124	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.131	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00068.45	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.298	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.279	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00091.65	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.279	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.49	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.208	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.221	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.194	5	NA	NA