Atr-MIR168a

Basic info.

• miRNA locus ID
• Atr-MIR168a

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold00011  8252729  8252846  +

• Comments
• A member of MIR168

• Confidence level
• 

Secondary structure and sequence

 T    -    CTTA      C   C          T           C  ACTTTAATA
  TCTT ACTG    CTCTAG TCG TTGGTGCAGG CGGGAACCCTT GC         
  |||| ||||    |||||| ||| |||||||||| ||||||||||| ||          
  AGAA TGAC    GAGGTT AGT AACTACGTTC GCCCTTGGGAG CG         
TT    A    ATCA      A   C          C           A  ATCACTCCC

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop sequence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

No miRNA locus in ± 10k bp interval.

Target gene info.[+]