Single miRNA

Atr-MIR169a

Basic info.

miRNA locus ID
Atr-MIR169a

Organism
Amborella trichopoda

Genomic location
AmTr_v1.0_scaffold00016 2808591 2808738 -

Comments
A member of MIR169

Confidence level

Secondary structure and sequence

mature sequence star sequence

5'

3'

 GAA       T    T  -T A          T    T     ----     ACAATGTGGATGGTTCTAGGGTGCT
    GAGACAG GTTA TT  G TAGCCAAGGA GACT GCCTA    CATCC                         
    ||||||| |||| ||  | |||||||||| |||| |||||    |||||                          
    TTCTGTC CAGT AG  C ATCGGTTCCT CTGG CGGAT    GGAGT                         
TATC       C    C  TC A          -    -     CTTT     ATTACTCCCAGAATTAACCCCGGTA

Get mature sequence
Get star sequence
Get miRNA stem-loop sequence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
evm_27.model.AmTr_v1.0_scaffold00154.48	2.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.109	2.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00079.19	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.267	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.101	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00035.32	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00071.174	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00089.21	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.452	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00053.100	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.85	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00038.111	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00186.17	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00097.45	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00023.138	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00092.146	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.306	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.345	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00038.61	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00026.74	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.284	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00154.31	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00085.65	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.119	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00032.264	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.281	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.26	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.311	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.240	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00088.56	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.355	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00062.224	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.427	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00062.223	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00124.27	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.217	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00018.3	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.228	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.244	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.371	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00008.89	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.89	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.242	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.367	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00113.15	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.331	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.192	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.220	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.382	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00155.28	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.149	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.222	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.172	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.90	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00031.59	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.161	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00080.74	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00206.8	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00052.124	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00112.20	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.398	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00031.19	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00152.33	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.117	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00014.133	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00037.81	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.121	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.266	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.562	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00119.10	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00119.8	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.221	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.523	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.35	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00055.66	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.57	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.243	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.144	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.251	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.203	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.665	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.17	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00067.142	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00068.147	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.8	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.190	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.266	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00099.79	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00036.125	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.374	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.297	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00032.178	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.294	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00118.32	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.149	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.356	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00013.256	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00075.10	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.56	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00078.138	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.12	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00047.71	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00013.191	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00102.18	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.17	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00164.13	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.133	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00115.5	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00118.28	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00051.49	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00089.62	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.230	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.172	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00171.30	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00047.120	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.229	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.217	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00085.25	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.377	5	NA	NA