Single miRNA

Atr-MIR169b

Basic info.

miRNA locus ID
Atr-MIR169b

Organism
Amborella trichopoda

Genomic location
AmTr_v1.0_scaffold00025 2916095 2916202 -

Comments
A member of MIR169

Confidence level

Secondary structure and sequence

mature sequence star sequence

5'

3'

  GAGAGAGTAGGAAGG    G   AA    TCT      --A G      TCTCTT
                 TTGT GGC  GTTG   TTGGCT   C TTGCGT      
                 |||| |||  ||||   ||||||   | ||||||       
                 AATA CTG  CAAC   AGCCGA   G AACGTA      
GTAACGGATAGTAGACG    G   -A    -CT      ACC G      CTCTTC

Get mature sequence
Get star sequence
Get miRNA stem-loop sequence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
evm_27.model.AmTr_v1.0_scaffold00191.1	2	NA	NA
evm_27.model.AmTr_v1.0_scaffold00092.153	2	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.15	2	NA	NA
evm_27.model.AmTr_v1.0_scaffold00013.21	2	NA	NA
evm_27.model.AmTr_v1.0_scaffold00089.9	2.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.384	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00077.233	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00071.20	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00149.13	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00032.88	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.480	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.136	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00175.11	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.111	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.104	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.153	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00156.26	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.49	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00450.1	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00026.119	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.239	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00032.76	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.169	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold04288.1	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00013.146	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold02697.1	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.264	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00020.48	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00074.39	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00156.18	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00159.29	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00031.41	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00013.24	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00011.147	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00043.94	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00170.33	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.193	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.88	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00074.48	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.71	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.249	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00086.35	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00119.69	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.48	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.294	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00038.153	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.104	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00150.9	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00042.40	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.478	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00135.66	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.216	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00054.49	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00155.34	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.125	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.348	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.240	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.176	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.24	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.113	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00148.60	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00088.75	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00108.45	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.123	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00108.50	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00013.257	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.393	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00101.80	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00235.11	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00130.41	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00053.60	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.443	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.440	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.26	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.401	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.93	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00119.52	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.276	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00062.160	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.136	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.235	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.235	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00062.120	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.242	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00060.130	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00146.48	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.219	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00085.65	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00018.84	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00038.151	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00126.1	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00071.25	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00202.3	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00092.137	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00138.25	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00055.175	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.262	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.35	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00131.63	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.448	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.101	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00080.10	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00106.20	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.71	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00023.14	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00030.109	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00113.32	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00146.34	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00078.90	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.299	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.359	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.46	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00078.142	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.247	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00159.11	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.11	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.115	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.69	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold04823.1	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.144	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.311	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.311	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.90	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.9	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00109.80	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.247	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00077.94	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00177.10	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00083.33	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.75	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00100.47	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00077.237	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00047.72	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00100.38	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.66	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00088.1	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.110	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00085.65	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00114.67	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.217	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00129.96	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00011.145	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.72	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00067.101	5	NA	NA