Single miRNA

Atr-MIR169c

Basic info.

miRNA locus ID
Atr-MIR169c

Organism
Amborella trichopoda

Genomic location
AmTr_v1.0_scaffold00057 2389300 2389431 -

Comments
A member of MIR169

Confidence level

Secondary structure and sequence

mature sequence star sequence

5'

3'

           GAGGGGT   ATGTGCTAGGGTAGCCAAGGATGACTTGCCTTTGATCACAATGTGTGAGA
                  GCA                                                  
                  |||                                                  G
                  ATC                                                  
GTACTCTCCGTTCTAGGA   CAATCGGTTCCGCTGAACGAGTATTTCGTGACCACCTCTTGGTAAAGTGA

Get mature sequence
Get star sequence
Get miRNA stem-loop sequence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
evm_27.model.AmTr_v1.0_scaffold00088.139	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.79	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.80	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.294	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.103	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.160	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.104	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.82	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.269	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00091.6	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00051.49	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00120.51	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00111.17	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00020.16	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.359	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00106.44	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00090.82	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00067.111	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.272	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.276	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold01332.1	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.279	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.287	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.337	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.138	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.425	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.230	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.304	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.64	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00077.108	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00077.106	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00110.84	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00026.123	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.33	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.42	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.290	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00086.85	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00014.133	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold05190.1	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.99	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00224.4	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.22	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.209	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.314	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.372	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00122.61	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.271	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00096.58	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.20	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.300	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00101.36	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00064.49	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00166.25	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00166.28	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00166.23	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00166.29	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00085.38	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00062.110	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00005.19	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00005.26	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.151	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00110.121	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00180.13	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.210	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.120	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.6	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.130	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00076.42	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.286	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.201	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00067.102	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.64	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.342	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.31	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00154.48	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00090.84	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00133.16	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00135.27	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.198	5	NA	NA