Atr-MIR170a

Basic info.

• miRNA locus ID
• Atr-MIR170a

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold00001  2643237  2643352  -

• Comments
• A member of MIR170

• Confidence level
• 

Secondary structure and sequence

 ATTGAAG   -TTA    C        AC             AA    T      AAA
        GAG    TTTG GATGTTGG  CGGTTCAATCAGA  ACAC GCCCAG   
        |||    |||| ||||||||  |||||||||||||  |||| ||||||    
        CTC    AGAC CTATAACC  GCCGAGTTAGTTT  TGTG TGGGTC   
CTGTTCTA   TTCG    C        GC             CG    C      GTT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop sequence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

No miRNA locus in ± 10k bp interval.

Target gene info.[+]