Single miRNA

Atr-MIR170c

Basic info.

miRNA locus ID
Atr-MIR170c

Organism
Amborella trichopoda

Genomic location
AmTr_v1.0_scaffold00037 3460017 3460137 -

Comments
A member of MIR170

Confidence level

Secondary structure and sequence

mature sequence star sequence

5'

3'

      AG  GTAAAATTAAC                C          -A A        AAG  A
     G  GT           AGGAGGTATTGATGCG CTCAATTCGA  G CATGGTTA   GC 
     |  ||           |||||||||||||||| ||||||||||  | ||||||||   || G
     C  CA           TCCTCTATAACTGCGC GAGTTAGGCT  C GTACCGAT   CG 
CTCAA AA  ---AGCCATCT                C          AG -        --G  T

Get mature sequence
Get star sequence
Get miRNA stem-loop sequence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
evm_27.model.AmTr_v1.0_scaffold00059.65	1.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.249	1.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.305	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00135.52	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00156.32	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00771.1	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.179	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.249	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.126	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.170	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00032.61	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.152	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00131.81	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.175	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.226	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00135.33	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.10	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.273	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.22	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00064.108	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.555	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00011.2	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.117	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.48	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00095.90	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold04934.1	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00026.62	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.27	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00078.202	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.273	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00097.47	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.309	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.399	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.54	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.87	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00008.60	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00046.60	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00018.114	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00099.71	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.169	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00095.96	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold02879.1	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00055.175	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00096.115	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00055.127	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.61	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00080.37	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00032.176	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.39	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00137.22	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00018.79	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00068.151	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00036.78	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.152	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.198	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00136.5	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.318	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.23	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.211	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.129	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00111.26	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.671	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00177.1	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00068.16	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00032.208	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.34	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00118.2	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00077.103	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.390	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.335	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.43	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.242	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00106.110	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.40	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00064.41	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00122.66	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00092.113	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.177	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00148.21	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00129.102	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.48	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00032.222	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00043.48	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.158	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00080.94	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00043.61	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00068.169	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00099.62	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.75	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00018.17	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.375	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00130.49	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.158	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00062.41	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.66	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00011.135	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00077.202	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.167	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.178	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.324	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00068.52	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.66	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.138	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00122.3	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00101.112	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00129.30	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.329	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00071.141	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.161	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.13	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.185	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.111	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00106.32	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00055.178	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00218.5	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.586	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00098.38	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00043.51	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00107.28	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00136.19	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.155	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.416	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.341	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00028.83	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.164	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.52	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00092.139	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.117	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.225	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00031.95	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00119.19	5	NA	NA