Atr-MIR170d

Basic info.

• miRNA locus ID
• Atr-MIR170d

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold00046  1289665  1289791  +

• Comments
• A member of MIR170

• Confidence level
• 

Secondary structure and sequence

      AATTC     A    TGT  C          A       T  GA   -  C      GTC   AA
           AGGGG GAGA   AG GATGTTGGTG GGTTCAA CC  AGA CG TTTTAC   GGA  
           ||||| ||||   || |||||||||| ||||||| ||  ||| || ||||||   |||   
           TCTCC CTCT   TC CTATAACCGC CCGAGTT GG  TCT GC AAGATG   CCT  
CTCTTCAATAT     -    ---  A          G       -  AC   A  A      ---   AA

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop sequence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

No miRNA locus in ± 10k bp interval.

Target gene info.[+]