Single miRNA

Atr-MIR170e

Basic info.

miRNA locus ID
Atr-MIR170e

Organism
Amborella trichopoda

Genomic location
AmTr_v1.0_scaffold00060 3430300 3430420 +

Comments
A member of MIR170

Confidence level

Secondary structure and sequence

mature sequence star sequence

5'

3'

AAGGGGACTC      -----------C   C                    TG       CC    TAG
          GGTTCG            GTG GGTGTTGGCACGGTTCAATC  ACTGCTG  CTGC   
          ||||||            ||| ||||||||||||||||||||  |||||||  ||||   T
          CTAAGC            CAC CTATAACCGTGCCGAGTTAG  TGGTGGT  GACG   
         A      TACCGACTAACT   A                    CG       AT    TGT

Get mature sequence
Get star sequence
Get miRNA stem-loop sequence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
evm_27.model.AmTr_v1.0_scaffold00059.65	1.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.249	1.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00156.32	2	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.152	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.61	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold02740.1	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00096.115	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00032.96	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00036.37	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.174	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold02879.1	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00031.52	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.12	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00032.208	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.158	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00043.61	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00129.30	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00071.141	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.161	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.56	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00008.36	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00053.155	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00209.9	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.294	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00054.8	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00023.143	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00077.122	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00102.29	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00046.60	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00130.18	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00101.112	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00126.41	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00111.119	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00036.102	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.117	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00055.86	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00032.51	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00107.28	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00055.127	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00130.16	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00144.2	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00135.33	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.249	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.17	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.378	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.390	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00119.10	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00053.44	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00023.100	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00023.96	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.184	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00031.94	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.337	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00107.33	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.90	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.234	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.372	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.150	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.72	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.19	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00032.57	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.41	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00141.40	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.184	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.222	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.293	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.204	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00090.40	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.216	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.126	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.170	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00131.19	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00072.2	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00203.5	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.225	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.123	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.120	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00121.2	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00062.41	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00011.232	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00011.64	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.348	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00122.66	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.140	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.140	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00115.9	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.115	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.355	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold01333.1	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00051.61	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00051.62	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.270	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00145.42	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.124	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.41	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00064.41	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.35	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00142.76	5	NA	NA