Atr-MIR170f

Basic info.

• miRNA locus ID
• Atr-MIR170f

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold00088  670598  670720  -

• Comments
• A member of MIR170

• Confidence level
• 

Secondary structure and sequence

   CATTGA          GC  C      C              A   AAAT      G AAGAA
         AGGAGTTCTT  GA ATTGGC CGGTTCGATCAGAG TGA    GCCAAG A     
         ||||||||||  || |||||| |||||||||||||| |||    |||||| |      
         TCTTCGAGAA  CT TAACCG GCCGAGTTAGTCTC ATT    TGGTTT T     
TTTCCTAAC          -A  A      C              -   ----      G AGGTA

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop sequence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

No miRNA locus in ± 10k bp interval.

Target gene info.[+]