Atr-MIR172a

Basic info.

• miRNA locus ID
• Atr-MIR172a

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold00012  6005575  6005740  +

• Comments
• A member of MIR172

• Confidence level
• 

Secondary structure and sequence

  -C     G GT                          A        -AAG  --A      --       ---------    -  TCA
 T  AGTCA T  TTGCTGGTGTAGCATCATCAAGATTC CATCTTGT    AG   TCCCTT  TGAATCG         GTGG GA   
 |  ||||| |  |||||||||||||||||||||||||| ||||||||    ||   ||||||  |||||||         |||| ||   C
 G  TCAGT A  AACGGCTACGTCGTAGTAGTTCTAAG GTAGAATA    TC   AGGGAG  ATTTAGC         CATC CT   
T TT     G AT                          G        CCAG  GAA      AG       ACTAGAATA    A  TCA

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop sequence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

No miRNA locus in ± 10k bp interval.

Target gene info.[+]