Single miRNA

Atr-MIR2111a

Basic info.

miRNA locus ID
Atr-MIR2111a

Organism
Amborella trichopoda

Genomic location
AmTr_v1.0_scaffold00165 819323 819463 +

Comments
A member of MIR2111

Confidence level

Secondary structure and sequence

mature sequence star sequence

5'

3'

  CTAACTGGCATG    -T  A                      GTTTAGCCCAC     T     -  TATC
              AGAG  GG TAATCTGTATCTTGAGGTTTGG           AACTA ACTTC AT    
              ||||  || ||||||||||||||||||||||           ||||| ||||| ||     
              TCTC  CC ATTGGACATAGGACTCCAGACC           TTGAT TGAGG TG    
TTTGACTGGTAACA    CT  -                      --AAAACCCAA     C     C  TGAA

Get mature sequence
Get star sequence
Get miRNA stem-loop sequence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
evm_27.model.AmTr_v1.0_scaffold00030.103	0.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00013.167	0.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00013.168	0.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00005.103	1	NA	NA
evm_27.model.AmTr_v1.0_scaffold00013.160	2.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00052.52	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.195	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00174.18	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.162	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00246.1	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00104.43	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.259	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.188	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.219	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00013.164	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00120.16	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00071.70	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00099.39	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00148.30	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00155.16	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.332	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.29	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00142.28	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.32	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.120	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00149.82	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00099.101	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00067.102	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00103.16	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00137.38	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.177	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.143	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00119.62	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00047.54	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00081.26	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00102.75	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00064.47	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00142.31	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00099.39	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00011.198	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.269	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00046.153	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.220	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00092.115	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00171.38	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.243	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00119.98	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00138.19	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.152	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00141.39	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.68	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.11	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00159.9	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00131.77	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.166	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00110.17	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00013.78	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00077.80	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00071.14	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00078.96	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00101.67	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.179	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00169.7	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00077.128	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.167	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.269	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00214.2	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.266	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00079.33	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.150	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00130.24	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00100.36	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.57	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.82	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00078.115	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.203	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00080.18	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.136	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.41	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00030.27	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00008.229	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.45	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.414	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00176.19	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00026.102	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00020.101	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold03969.1	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.220	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.188	4.75	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.285	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00085.85	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.124	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.131	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.150	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.304	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.538	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00079.36	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00013.188	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.17	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00077.80	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.58	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00109.141	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00077.132	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.35	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.355	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.229	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.73	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00085.27	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00036.78	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00144.32	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.223	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00120.45	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00067.27	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00119.66	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold01969.1	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.155	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.145	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00153.14	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00031.96	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.137	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.230	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.119	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.654	5	NA	NA