Single miRNA

Atr-MIR2950a

Basic info.

miRNA locus ID
Atr-MIR2950a

Organism
Amborella trichopoda

Genomic location
AmTr_v1.0_scaffold00059 4206320 4206421 -

Comments
A member of MIR2950

Confidence level

Secondary structure and sequence

mature sequence star sequence

5'

3'

  GAA       TT   G T                   TG       -  TT
     CATGGGT  GTG T TATTCCATCTCTTGCACAC  GACCAGT GC  
     |||||||  ||| | |||||||||||||||||||  ||||||| ||   
     GTACCTA  CAC G ATAAGGTGGGGGACGTGTG  TTGGTCA CG  
CTGAC       CC   G T                   -G       A  AC

Get mature sequence
Get star sequence
Get miRNA stem-loop sequence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
evm_27.model.AmTr_v1.0_scaffold00006.86	2.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00144.58	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.361	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.126	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00171.54	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00027.47	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00037.76	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00028.75	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00083.16	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00138.45	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.176	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00169.32	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00135.4	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.330	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.198	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00099.37	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold01922.1	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.99	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.140	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.222	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00046.130	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.42	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.190	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00015.53	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00018.173	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00015.20	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00133.25	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.5	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.244	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.105	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.182	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.196	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00163.20	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00165.7	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00046.30	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00101.130	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00176.9	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00202.7	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.162	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.249	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.300	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.157	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00119.90	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00102.65	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00027.150	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00080.36	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.52	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00099.49	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.79	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00063.37	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00067.90	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00126.42	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.34	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00060.8	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00062.75	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00130.59	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.406	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.243	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.205	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.196	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold05646.3	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00077.116	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00062.133	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.172	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.398	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.173	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.107	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.129	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.97	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.21	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.94	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.108	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.166	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00070.125	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.144	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00005.69	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.162	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.8	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00140.4	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.363	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.161	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00008.108	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.259	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00032.76	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.113	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.26	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.146	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00092.75	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.166	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.12	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00077.112	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.215	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00014.26	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00027.89	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00166.11	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.50	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.191	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.327	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.165	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.172	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.187	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.401	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.17	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.398	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00145.20	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.173	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00053.30	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.261	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00185.19	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.197	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.230	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00077.51	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.160	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00062.60	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00167.12	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00070.38	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00157.10	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00122.5	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00101.77	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.152	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.292	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.124	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00099.106	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00078.20	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.259	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00092.132	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.320	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00062.72	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.235	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00032.147	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.211	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00125.28	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00046.126	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00071.184	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00090.49	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00088.155	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00165.16	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.356	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00129.95	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00076.63	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.155	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00083.39	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00083.37	5	NA	NA