Single miRNA

Atr-MIR393b

Basic info.

miRNA locus ID
Atr-MIR393b

Organism
Amborella trichopoda

Genomic location
AmTr_v1.0_scaffold00029 3201470 3201641 +

Comments
A member of MIR393

Confidence level

Secondary structure and sequence

mature sequence star sequence

5'

3'

  CCTCTGAGACGGGATGAAGC                 T         TGAGAGAGAGAGAGACCAGTACA  G     -GAGAG   AA  GAG
                      ATCCAAAGGGATCGCAT GATCCGTCA                       GA TTTTA      AGA  GG   
                      ||||||||||||||||| |||||||||                       || |||||      |||  ||    
                      TAGGTTTCCCTAGCGTA CTAGGTAGT                       CT AGAGT      TTT  CC   
CTCACCTCGGTCTCCTCCTCCA                 -         ----------------TAGAAAG  G     GAGAGA   GA  ATA

Get mature sequence
Get star sequence
Get miRNA stem-loop sequence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
evm_27.model.AmTr_v1.0_scaffold00204.7	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00088.95	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.123	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.141	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00026.64	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.461	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00037.86	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.253	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.326	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00030.64	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00030.66	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.34	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00043.70	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.272	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.1	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00099.105	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.122	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.17	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.123	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.535	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00148.58	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00054.54	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.178	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00008.107	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.52	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00054.72	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.53	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.12	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.303	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.306	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00047.124	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00111.89	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.155	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.289	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.50	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00013.142	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.158	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.69	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.48	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.566	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00013.98	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00013.97	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.131	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00108.3	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00159.8	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00034.49	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00067.69	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.33	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.107	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.59	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.58	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00074.39	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00117.36	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.112	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00082.7	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00031.11	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00030.108	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.253	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.25	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.27	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.71	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00054.38	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00116.22	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00110.85	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00130.20	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.566	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.100	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.105	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00164.27	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00071.173	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00071.174	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.33	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.157	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00074.102	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.365	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00177.24	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.398	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.335	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.69	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00095.142	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.200	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00062.200	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00073.18	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00139.1	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.31	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00034.88	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.40	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00119.82	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.187	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.28	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00101.80	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00023.6	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00030.14	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00145.30	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00095.115	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.191	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.120	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.67	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00147.32	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00109.155	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00154.29	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00053.106	5	NA	NA