Single miRNA

Atr-MIR394a

Basic info.

miRNA locus ID
Atr-MIR394a

Organism
Amborella trichopoda

Genomic location
AmTr_v1.0_scaffold00001 3120995 3121123 +

Comments
A member of MIR394

Confidence level

Secondary structure and sequence

mature sequence star sequence

5'

3'

      TT         -ATT       TTC             CCT    CTAAAAAATGAGAGT
 AGGGT  CTTGCAGAG    GTTGGCA   TGTCCACCTCCTC   CTCT               
 |||||  |||||||||    |||||||   |||||||||||||   ||||               T
 TCTCA  GGGTGTCTC    CAACCGT   ACGGGTGGAGGAG   GCTA               
C     TC         ACAC       CCT             --T    CGTAATTTTAGCTTT

Get mature sequence
Get star sequence
Get miRNA stem-loop sequence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
evm_27.model.AmTr_v1.0_scaffold00013.9	1	NA	NA
evm_27.model.AmTr_v1.0_scaffold02101.1	1.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold02587.1	2	NA	NA
evm_27.model.AmTr_v1.0_scaffold00071.92	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00224.3	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.286	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00451.1	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00104.66	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00074.85	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00074.85	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00074.86	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00020.113	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00023.134	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00120.51	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00111.110	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00101.124	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00173.5	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00133.17	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00018.118	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.324	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00005.230	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00110.16	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.124	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.179	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00013.150	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00018.110	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.302	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00081.43	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.311	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00104.46	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00074.95	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00077.193	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00103.84	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00174.29	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.107	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00038.71	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.50	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.244	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.172	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.120	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00031.57	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00023.145	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00013.261	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00078.8	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00068.135	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.191	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.237	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.176	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.254	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00156.14	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00077.113	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00068.59	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00038.237	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00038.239	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.333	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00026.2	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00005.53	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00110.55	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.199	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00074.4	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00062.7	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00060.6	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00014.7	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.261	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00182.26	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00005.51	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.114	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00124.23	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00077.217	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.147	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00062.133	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.69	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.157	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00099.62	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00096.26	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00036.120	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.258	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.483	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.211	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00263.3	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00071.204	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.399	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00013.20	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00047.38	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00031.2	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00074.85	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00074.86	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00067.140	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.347	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00038.93	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.442	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00109.13	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00393.1	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00052.75	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00138.27	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00074.95	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00023.57	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00038.65	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.51	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.319	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00111.132	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.49	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.53	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.240	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.49	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.133	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.104	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.202	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00110.28	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.62	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.278	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00035.24	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.82	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.66	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00038.244	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00027.154	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00027.154	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00096.102	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.61	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00067.24	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00008.232	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00159.21	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.293	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.41	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.61	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.273	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.283	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00183.23	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00070.52	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00085.86	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00135.4	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.300	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00103.20	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.145	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.165	5	NA	NA