Atr-MIR395a

Basic info.

• miRNA locus ID
• Atr-MIR395a

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold00060  2574004  2574150  +

• Comments
• A member of MIR395

• Confidence level
• 

Secondary structure and sequence

  TGC      A   C  TA            C C        A  T        -   -T   AG  AGA   AG
     ATTGGG GAC CC  GAGTTCCCTCAA C CTTCAGCG TG GCTCTCTC CTA  ACA  AG   GAG  
     |||||| ||| ||  |||||||||||| | |||||||| || |||||||| |||  |||  ||   |||   
     TAACTC CTG GG  CTCAAGGGGGTT G GAAGTCGC AT TGAGAGAG GGT  TGT  TC   TTT  
TCTGA      A   A  TC            T T        -  T        A   TT   GG  GTA   GA

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop sequence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

No miRNA locus in ± 10k bp interval.

Target gene info.[+]