Single miRNA

Atr-MIR395b

Basic info.

miRNA locus ID
Atr-MIR395b

Organism
Amborella trichopoda

Genomic location
AmTr_v1.0_scaffold00123 806997 807196 +

Comments
A member of MIR395

Confidence level

Secondary structure and sequence

mature sequence star sequence

5'

3'

TATGTTGGGAGACC  T  AGTTCCCCCTACACTTCAGCGATGTGATGTGCTCTCTACAAGAGAGAAAGAGATTTAGTTTATGCTGAAGTATTTTAGAGAGAGAGAG
              CC GG                                                                                        
              || ||                                                                                        T
              TC TG                                                                                        
                -  ATAACTCCCAGAGGTTCTCAAGGGGGTTTGTGAAGTCGCAGTTGAGGGAGAGAGAGAGAGAGAACGGTTTTCTGAAATCGTGTTTCAT

Get mature sequence
Get star sequence
Get miRNA stem-loop sequence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
evm_27.model.AmTr_v1.0_scaffold00056.162	2	NA	NA
evm_27.model.AmTr_v1.0_scaffold00156.30	2.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.565	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00165.42	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.147	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00068.90	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.369	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00078.156	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00098.23	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00111.128	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00032.228	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.412	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold01464.1	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00098.28	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.188	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00087.5	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00008.19	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00008.122	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00043.57	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.385	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00068.107	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00111.47	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.113	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00183.12	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00037.62	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.474	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.75	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00078.125	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00126.59	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.200	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.188	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00053.60	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.129	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.191	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00408.1	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.342	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.240	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00142.37	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.189	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00076.43	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00177.3	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.73	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.176	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.428	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.217	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.175	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00036.48	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.84	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00062.193	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00155.58	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00023.203	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.91	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.178	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00060.159	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00322.3	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00085.87	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00181.35	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.1	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.75	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00013.219	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.144	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00077.108	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.562	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00054.72	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00110.48	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.306	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00013.146	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00011.160	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00110.128	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.406	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.360	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.240	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00142.37	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00098.12	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.95	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.87	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.152	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00080.15	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.182	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.649	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00047.167	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.92	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.17	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00116.10	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00068.58	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00052.39	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.295	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.121	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00144.14	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00028.73	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.316	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.296	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00106.131	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.199	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.127	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.297	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00028.109	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00154.5	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00081.24	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.175	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.397	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00062.21	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00027.99	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.181	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00090.53	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.356	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.169	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.220	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00062.74	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00037.79	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00015.84	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.319	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00095.9	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00174.3	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00077.176	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.135	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.274	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.97	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00137.20	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.289	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00114.16	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00032.65	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.15	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.9	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00110.19	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00013.125	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00162.34	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00110.39	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00037.48	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.24	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.24	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00014.105	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.141	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00157.25	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.294	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00103.76	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.139	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00062.85	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00054.41	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00109.12	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.259	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00135.68	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.8	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.350	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00023.203	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.274	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.523	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.402	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00074.5	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.591	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00046.155	5	NA	NA