Single miRNA

Atr-MIR396a

Basic info.

miRNA locus ID
Atr-MIR396a

Organism
Amborella trichopoda

Genomic location
AmTr_v1.0_scaffold00013 1778378 1778512 -

Comments
A member of MIR396

Confidence level

Secondary structure and sequence

mature sequence star sequence

5'

3'

GATTTGA   --------    -   C     A    GT         A  C       ACCC T     T    G
       TGT        GTTC ATG TTTCC CAGG  TTCTTGAAC TG TGCTCGA    G CTTCT CCAT 
       |||        |||| ||| ||||| ||||  ||||||||| || |||||||    | ||||| |||| C
       GCA        TAAG TAC AAAGG GTCC  AAGAATTTG AC ATGAGTT    C GAAGA GGTA 
          ATACTAAG    A   T     C    GT         A  A       GAAA -     -    T

Get mature sequence
Get star sequence
Get miRNA stem-loop sequence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
evm_27.model.AmTr_v1.0_scaffold00069.209	1.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.233	1.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.196	1.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.185	1.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00018.161	1.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.51	1.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.202	2	NA	NA
evm_27.model.AmTr_v1.0_scaffold00054.16	2.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00067.84	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.293	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00105.25	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00137.48	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00011.106	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.57	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00068.176	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.453	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.188	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00137.54	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00005.255	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.19	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00096.109	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00087.52	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.84	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.270	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.164	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00111.41	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.145	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.255	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.418	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.383	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00013.154	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.175	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.46	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.128	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.173	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.281	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.70	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00087.53	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.229	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00149.48	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.199	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.72	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.207	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.143	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.225	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.210	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.216	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.235	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00087.14	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00269.3	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.352	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00100.38	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.211	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00062.32	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.299	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00072.78	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00078.96	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00026.71	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00103.106	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00095.83	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.389	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00153.14	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.191	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00108.23	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold03501.1	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00030.165	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.133	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00157.14	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00177.13	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.123	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.308	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.204	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00032.98	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00062.230	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.383	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00081.35	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00071.59	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.32	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.6	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.174	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.52	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.293	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.2	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.100	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00097.9	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.436	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.287	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.134	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.558	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.558	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.498	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.55	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00169.14	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.341	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00133.59	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.57	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00086.75	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00164.6	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.152	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.89	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.185	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.99	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00060.157	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.300	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00020.21	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00014.57	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00005.116	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.15	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00011.141	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00127.2	5	NA	NA