Single miRNA

Atr-MIR396c

Basic info.

miRNA locus ID
Atr-MIR396c

Organism
Amborella trichopoda

Genomic location
AmTr_v1.0_scaffold00013 112962 113099 +

Comments
A member of MIR396

Confidence level

Secondary structure and sequence

mature sequence star sequence

5'

3'

 GATTTGA          -CTT       G    T      A  G       A  AGC          TTA
        TGTTTTCATG    TCCACAG CTTT TTGAAC TG TATTCAG CG   CATCTTCGAG   
        ||||||||||    ||||||| |||| |||||| || ||||||| ||   ||||||||||    
        ACAAAGGTAC    AGGTGTC GAAA AACTTG AC ATGAGTT GT   GTAGAGGTTC   
TAGTACTA          AAAT       -    T      A  A       -  AAC          TTG

Get mature sequence
Get star sequence
Get miRNA stem-loop sequence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
evm_27.model.AmTr_v1.0_scaffold00069.209	0.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.233	0.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.196	0.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.185	0.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00018.161	0.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.51	0.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.202	1	NA	NA
evm_27.model.AmTr_v1.0_scaffold00037.106	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00099.129	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00076.27	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.240	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00099.46	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00087.53	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.199	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.99	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00131.8	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00095.91	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold03501.1	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00074.14	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00108.28	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00062.230	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00053.76	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00062.41	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00071.132	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00005.186	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.100	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.20	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.102	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00096.46	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00030.109	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.206	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.82	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.15	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00062.164	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00165.8	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.134	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00087.52	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00013.274	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00100.36	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.123	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00054.16	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00080.64	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00146.19	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.56	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.35	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00030.199	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.185	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.279	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00047.173	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.209	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00154.5	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00046.122	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.188	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00060.104	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.281	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.258	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00096.73	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.190	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00071.93	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.155	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.155	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.55	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00036.63	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00169.33	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00103.112	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.254	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00020.82	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00200.12	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.348	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00032.178	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.104	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00028.77	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.185	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00177.3	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.440	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.26	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.83	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00071.201	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00171.43	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00054.38	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00082.13	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00082.13	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.157	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00062.138	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.27	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.48	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.323	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.50	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00052.81	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.293	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.78	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.79	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00071.147	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.71	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00072.78	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00036.38	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.219	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.57	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00088.108	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00085.14	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.383	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00088.123	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.285	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.193	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00030.109	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00055.75	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00252.1	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.405	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.101	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00110.45	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.199	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00018.75	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.68	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00027.6	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.8	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.498	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00032.178	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.67	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.225	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00018.11	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.216	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00075.50	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.258	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00015.61	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.97	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.82	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00106.27	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00055.62	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.204	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00149.8	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.56	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.80	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00027.126	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00070.54	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.113	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.535	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.157	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00053.179	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.229	5	NA	NA