Single miRNA

Atr-MIR396d

Basic info.

miRNA locus ID
Atr-MIR396d

Organism
Amborella trichopoda

Genomic location
AmTr_v1.0_scaffold00029 1065365 1065499 -

Comments
A member of MIR396

Confidence level

Secondary structure and sequence

mature sequence star sequence

5'

3'

GACTTGATCTCTTCATGCTC    ACGGCTTTCTTGAACATGGCGCTTAGACACCACTTCCACAGGGTCCTGTGA
                    TTCC                                                   
                    ||||                                                   A
                    TACT                                                   
                AAGA    AAGAAAAGTAGAAAAGGGTGTCGAAAGAACTCGAACAATGAATCGAAACGA

Get mature sequence
Get star sequence
Get miRNA stem-loop sequence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
evm_27.model.AmTr_v1.0_scaffold03501.1	1	NA	NA
evm_27.model.AmTr_v1.0_scaffold00099.66	1.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00157.14	2.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.56	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00008.36	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.209	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.233	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.196	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.185	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00205.3	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00018.161	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.51	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.188	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.153	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.270	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00080.23	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold02578.1	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.106	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.175	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.33	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00199.7	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00199.6	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold02709.1	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.227	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00035.26	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.193	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00035.47	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.35	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.8	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.498	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00027.162	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.146	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.209	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00013.181	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.141	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.142	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00175.25	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00085.38	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.199	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.111	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00097.45	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00129.43	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00080.8	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00018.101	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.27	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.148	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00098.52	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.82	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.137	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.373	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00154.54	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.91	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.299	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00360.2	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.111	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.197	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.57	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.63	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.289	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.100	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.444	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold02831.1	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.5	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.97	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00099.146	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.150	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00111.77	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00038.46	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.134	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00060.45	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold03799.1	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold03799.1	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.480	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.192	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.77	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.272	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.202	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00106.54	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold05597.1	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00068.152	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.130	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.182	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00043.1	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.183	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00144.2	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00005.44	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.6	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.48	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.246	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.290	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00077.237	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00076.44	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00013.174	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.276	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00068.6	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.187	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.54	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.54	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.54	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00077.192	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.289	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.166	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00165.33	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00169.37	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.185	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00095.2	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.19	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00171.3	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.138	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00067.123	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.105	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.161	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.323	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.192	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00067.125	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.307	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.405	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.199	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00011.191	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.56	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.130	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.50	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold02709.1	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.242	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.203	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00147.42	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00147.42	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.266	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.133	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.246	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.207	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00018.11	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.230	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.193	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.290	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.107	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.207	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.459	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00135.6	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.204	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.81	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00060.35	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.242	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.348	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00117.6	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00202.2	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.90	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00077.6	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.78	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.162	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00071.202	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.78	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.123	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.291	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00038.20	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00199.15	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.255	5	NA	NA