Single miRNA

Atr-MIR396e

Basic info.

miRNA locus ID
Atr-MIR396e

Organism
Amborella trichopoda

Genomic location
AmTr_v1.0_scaffold00244 33730 33871 +

Comments
A member of MIR396

Confidence level

Secondary structure and sequence

mature sequence star sequence

5'

3'

GATT    -     C   -C       A  C          A  G   A   A  GGC C      TC   GT
    TGAT GTTTT ATG  TTTTCAC GG TTTCTTGAAC TG TAC CAG CA   C TCTTCG  GAG  
    |||| ||||| |||  ||||||| || |||||||||| || ||| ||| ||   | ||||||  |||  T
    ACTA CAAAG TAC  AGAGGTG CC AAAGAACTTG AC ATG GTC GT   G AGAAGC  CTC  
TAAT    A     A   AA       -  T          G  A   A   -  AGT T      -T   GG

Get mature sequence
Get star sequence
Get miRNA stem-loop sequence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
evm_27.model.AmTr_v1.0_scaffold00069.209	0.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.233	0.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.196	0.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.185	0.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00018.161	0.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.51	0.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.202	1	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.209	2	NA	NA
evm_27.model.AmTr_v1.0_scaffold00038.85	2.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00032.178	2.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.34	2.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00120.5	2.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.16	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00068.176	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.200	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.453	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00053.42	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.69	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00087.53	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.199	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.41	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00071.203	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.296	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.298	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.10	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold03501.1	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00175.15	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00062.230	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00095.17	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00102.70	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.20	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00068.109	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.82	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.50	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00036.63	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.99	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.159	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00077.105	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00062.164	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00074.77	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00072.78	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00063.37	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00098.52	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.266	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00038.77	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00054.16	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.399	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00030.199	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.230	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.347	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00047.173	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.212	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00030.27	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.154	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00032.122	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00046.122	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.52	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.281	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.70	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.258	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00075.32	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.100	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.222	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.199	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00071.93	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.155	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.55	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00169.14	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.207	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.226	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00072.78	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.227	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00014.4	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.254	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.410	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.143	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00080.14	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.21	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00200.12	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.207	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.237	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00028.77	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00164.13	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00106.54	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.440	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.319	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00082.13	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.157	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00060.84	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.558	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.89	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.48	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.406	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.309	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.488	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00114.65	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00062.12	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00011.60	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00027.107	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.78	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.79	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.208	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.235	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.149	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.200	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.33	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00151.11	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.262	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00252.1	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.144	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.537	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.405	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00037.130	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.203	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00027.6	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.3	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.8	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.498	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.396	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.41	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.104	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00119.41	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.66	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00018.110	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00055.75	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.188	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.13	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00079.122	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.97	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00011.192	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00055.62	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00110.100	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00083.25	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00149.8	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00129.46	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.123	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.262	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00104.52	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.113	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.13	5	NA	NA