Single miRNA

Atr-MIR396f

Basic info.

miRNA locus ID
Atr-MIR396f

Organism
Amborella trichopoda

Genomic location
AmTr_v1.0_scaffold00488 2988 3125 -

Comments
A member of MIR396

Confidence level

Secondary structure and sequence

mature sequence star sequence

5'

3'

 GATTTGA          -CTT       G    C      A  G       A  AGC    A     TTA
        TGTTTTCATG    TCCATAG CTTT TTGAAC TG TATTCAG CG   CATC TCGAG   
        ||||||||||    ||||||| |||| |||||| || ||||||| ||   |||| |||||    
        ACAAAGGTAC    AGGTGTC GAAA AACTTG AC ATGAGTT GT   GTAG GGCTC   
TAGTACTA          AAAT       -    T      G  A       -  AAT    A     TTG

Get mature sequence
Get star sequence
Get miRNA stem-loop sequence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
evm_27.model.AmTr_v1.0_scaffold00069.209	0.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.233	0.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.196	0.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.185	0.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00018.161	0.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.51	0.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.202	1	NA	NA
evm_27.model.AmTr_v1.0_scaffold00030.199	2	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.258	2.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.185	2.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00013.222	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00087.53	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.199	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00062.118	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.238	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00141.40	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.296	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.167	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00023.214	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold03501.1	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00062.230	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.13	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.175	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.180	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.174	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.20	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00071.203	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.99	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00013.115	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.149	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00090.81	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00062.164	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.259	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00030.87	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.106	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.15	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.78	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.79	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00015.20	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00015.53	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00054.16	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00080.64	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.164	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00111.41	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.49	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.180	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00133.51	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00047.173	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.187	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00023.145	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.347	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.101	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.209	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.154	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00046.122	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00068.109	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.70	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.230	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00075.32	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00126.32	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.43	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.50	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.207	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.210	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.557	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.8	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00036.63	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00081.1	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00032.178	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.270	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.220	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.212	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.81	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00014.4	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00148.62	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00055.62	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.254	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.375	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00129.47	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00076.22	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00200.12	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.87	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00205.3	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00146.57	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00028.77	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00038.85	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.440	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00082.13	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00082.13	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.157	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00129.13	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.48	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.326	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.309	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00052.81	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.285	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00072.114	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00144.17	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.215	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00072.78	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.149	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00103.105	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.651	4.75	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.199	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00018.39	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.410	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00252.1	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.135	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.405	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.199	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00027.6	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.498	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.396	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.57	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.41	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.323	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00046.173	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.235	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.48	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00013.53	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.101	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.97	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.5	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.161	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.192	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00149.8	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.293	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.113	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.375	5	NA	NA