Single miRNA

Atr-MIR396g

Basic info.

miRNA locus ID
Atr-MIR396g

Organism
Amborella trichopoda

Genomic location
AmTr_v1.0_scaffold01070 2975 3112 +

Comments
A member of MIR396

Confidence level

Secondary structure and sequence

mature sequence star sequence

5'

3'

 GATTTGA          -CTT       G    C      A  G       A  AGC          TTA
        TGTTTTCATG    TCTACAG CTTT TTGAAC TG TATTCAG CG   CATCTTCGAG   
        ||||||||||    ||||||| |||| |||||| || ||||||| ||   ||||||||||    
        ACAAAGGTAC    AGGTGTC GAAA AACTTG AC ATGAGTT GT   GTAGAGGCTC   
TAGTACTA          AAAT       -    T      A  A       -  CAC          TTG

Get mature sequence
Get star sequence
Get miRNA stem-loop sequence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
evm_27.model.AmTr_v1.0_scaffold00069.209	0.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.233	0.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.196	0.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.185	0.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00018.161	0.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.51	0.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.202	1	NA	NA
evm_27.model.AmTr_v1.0_scaffold00082.13	2.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00071.92	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00101.18	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00146.48	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00087.53	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00097.9	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.199	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00085.15	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00037.81	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold03501.1	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00062.230	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.20	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00086.75	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.99	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00062.164	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.153	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00166.38	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00054.16	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00038.62	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.48	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00018.110	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00030.199	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.225	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.120	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00047.173	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00092.144	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.209	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00046.122	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.188	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00023.205	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.174	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.54	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00082.13	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.258	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00036.63	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00038.40	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00038.86	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.97	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.39	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00055.62	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.254	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00159.34	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00121.17	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00053.179	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00060.43	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00146.19	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00014.117	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00103.51	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00200.12	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00075.28	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00028.77	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.54	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00038.85	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00154.56	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.440	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.157	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00110.106	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.48	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.349	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.70	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.557	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00149.86	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00052.81	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00151.17	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00027.107	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00074.5	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.78	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.79	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00072.78	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.254	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.622	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00008.112	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00077.118	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.35	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00067.59	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.594	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.49	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00122.48	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00036.21	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.199	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.149	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00018.39	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00068.172	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00252.1	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.56	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.153	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.199	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.520	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00027.6	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.8	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.498	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00032.178	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00202.14	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.50	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00008.36	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.227	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.222	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00005.52	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00035.39	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.73	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.80	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.325	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.96	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00149.8	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.113	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00027.126	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00070.54	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.157	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00083.2	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold03307.1	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.291	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.94	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00142.48	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00129.5	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00129.7	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.92	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.351	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.41	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00078.82	5	NA	NA