Single miRNA

Atr-MIR396k

Basic info.

miRNA locus ID
Atr-MIR396k

Organism
Amborella trichopoda

Genomic location
AmTr_v1.0_scaffold00046 1545684 1545791 +

Comments
A member of MIR396

Confidence level

Secondary structure and sequence

mature sequence star sequence

5'

3'

TT         ----      C                         TTAGT  TTG
  GGAAGTCCT    GTCATG TTTTCCACAGCTTTCTTGAACTTCT     CC   
  |||||||||    |||||| |||||||||||||||||||||||||     ||    
  TTTTTAGGA    CGGTAC AAAGGGTGTTGAAGGAACTTGAAGA     GG   
           ATAA      C                         TCTAC  TAA

Get mature sequence
Get star sequence
Get miRNA stem-loop sequence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
evm_27.model.AmTr_v1.0_scaffold03501.1	0.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00157.14	2	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.153	2.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.56	2.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00008.36	2.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.175	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00099.66	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.209	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.233	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.196	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.185	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00018.161	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.51	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00080.23	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.35	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.30	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.270	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.100	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.227	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00035.26	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00035.47	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00018.101	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.111	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.97	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00099.146	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.137	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.373	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00026.49	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.77	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.498	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00027.162	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.8	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.197	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.63	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.209	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.193	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.185	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00154.54	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00095.2	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00147.38	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.399	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.19	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.169	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.167	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00072.32	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00068.152	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.299	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.236	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.290	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.349	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00023.21	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.54	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.167	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00014.37	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00090.68	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00076.44	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00038.46	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00175.25	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.405	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.307	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.190	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00077.192	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.82	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00106.54	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00204.1	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00053.121	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.138	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.495	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.111	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00067.52	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00184.25	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.622	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.186	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.586	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.77	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00060.27	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.320	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00200.1	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00015.48	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.229	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold03564.1	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.36	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00038.116	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.163	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.262	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.40	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00136.6	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.341	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.188	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.290	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00060.18	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00101.136	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00205.3	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.284	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.38	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00152.4	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.95	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.69	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00067.176	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00005.169	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold01922.1	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00026.2	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.266	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.202	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00103.62	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.51	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.411	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.188	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.255	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.278	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.123	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.88	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.402	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.180	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.354	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00080.81	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.191	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00123.10	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.145	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.220	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00097.44	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.18	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00160.2	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.586	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.153	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00120.4	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.402	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00027.69	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00078.151	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00087.20	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00100.11	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00106.5	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.271	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.289	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00178.6	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00135.6	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00036.35	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00064.64	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00176.17	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00205.3	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.88	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.69	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00030.199	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00027.162	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00063.50	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00142.34	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00068.86	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00104.37	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.503	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.210	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00078.152	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold02709.1	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00013.150	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.290	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00077.177	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.186	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00119.5	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00252.2	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00064.80	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.622	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.6	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.6	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.80	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00008.241	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00126.58	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00146.34	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00073.60	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00116.3	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00109.50	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.161	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00060.105	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.185	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.6	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.315	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.581	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.200	5	NA	NA