Single miRNA

Atr-MIR397a

Basic info.

miRNA locus ID
Atr-MIR397a

Organism
Amborella trichopoda

Genomic location
AmTr_v1.0_scaffold00016 5120362 5120463 -

Comments
A member of MIR397

Confidence level

Secondary structure and sequence

mature sequence star sequence

5'

3'

  GGGGA    A    TACA    C               A    CCCAAAA
       GAAA ACCA    CATC TTGAGTGCAGCGTTG TGAA       
       |||| ||||    |||| ||||||||||||||| ||||        
       CTTT TGGT    GTAG AACTCATGTCGCGAC ACTT       
TAATGTA    A    TTCC    T               G    TAATCCC

Get mature sequence
Get star sequence
Get miRNA stem-loop sequence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
evm_27.model.AmTr_v1.0_scaffold00012.24	1.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.25	2	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.24	2	NA	NA
evm_27.model.AmTr_v1.0_scaffold00055.122	2	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.238	2.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00023.19	2.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00055.123	2.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.180	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00023.135	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00060.71	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00053.73	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00086.64	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.228	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00107.30	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00047.131	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.363	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.145	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.108	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.108	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00156.12	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.128	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.347	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00005.65	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.221	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00189.6	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.343	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00030.15	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00067.32	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00095.73	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00177.22	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00031.107	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00043.28	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.129	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00078.27	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.202	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00096.99	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.104	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00064.50	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00146.5	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold03898.1	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold01740.1	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00055.99	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.130	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.59	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00055.22	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00054.72	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00013.232	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00077.19	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.84	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.294	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00209.9	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00106.20	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.246	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.39	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.50	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00122.78	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00067.127	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00038.77	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00137.26	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.53	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.198	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00067.204	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00067.209	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.273	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00256.2	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.456	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00182.12	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.189	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00067.207	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00110.14	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.132	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.219	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00070.131	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.70	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.151	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00070.43	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00157.28	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.212	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00104.56	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.73	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.442	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.567	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.187	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00130.72	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.130	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00023.144	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00096.7	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00060.143	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.92	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.166	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.279	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.318	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00101.70	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00078.201	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00043.87	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00177.14	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00046.84	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.186	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00054.20	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00142.63	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.239	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00062.183	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.295	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00131.62	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.390	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00011.194	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.391	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.63	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.279	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.104	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.128	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.278	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00062.156	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00030.32	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00015.28	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.342	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.45	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00106.54	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00008.54	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00183.26	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00091.35	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00071.140	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.304	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00147.1	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.164	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.38	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.334	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00115.1	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.161	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.595	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.143	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00104.47	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.257	5	NA	NA