Single miRNA

Atr-MIR397b

Basic info.

miRNA locus ID
Atr-MIR397b

Organism
Amborella trichopoda

Genomic location
AmTr_v1.0_scaffold00072 1231142 1231264 +

Comments
A member of MIR397

Confidence level

Secondary structure and sequence

mature sequence star sequence

5'

3'

 TAT     -AA      AA   C    A           G    C      ACCTAATTTT
    GAGGA   ACCAGA  CAT ATTG GTGCAGCGTTG TGAA CCCAAA          
    |||||   ||||||  ||| |||| ||||||||||| |||| ||||||          C
    CTCCT   TGGTTT  GTA TAAC CACGTCGCGAC GCTT GGGTTT          
GCAC     ATA      CC   T    C           G    T      GTTCTCTCTA

Get mature sequence
Get star sequence
Get miRNA stem-loop sequence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
evm_27.model.AmTr_v1.0_scaffold00045.24	1	NA	NA
evm_27.model.AmTr_v1.0_scaffold00055.122	1	NA	NA
evm_27.model.AmTr_v1.0_scaffold00023.19	1.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.24	2	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.246	2.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.25	2.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.131	2.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.238	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00055.123	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.72	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00108.27	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.543	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.130	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.67	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.126	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00077.132	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00011.125	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00101.36	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.128	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00157.28	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00023.135	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.22	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00037.59	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00138.18	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00064.25	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00071.126	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00086.32	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00166.18	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.228	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.295	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00015.28	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00092.135	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.198	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.92	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.305	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.88	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00101.72	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00013.210	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00068.35	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00119.68	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.281	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.178	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.108	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.108	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.74	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00008.184	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.402	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.199	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00078.37	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00037.94	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.128	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.176	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.152	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.218	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00015.71	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00131.81	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.262	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.216	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00036.15	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00101.35	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00014.127	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00055.166	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.227	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.48	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00153.52	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00092.118	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.59	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.209	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00032.176	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00026.68	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00034.118	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00030.42	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.104	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.53	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00107.35	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00038.145	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00038.145	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.148	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.203	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.169	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00104.7	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00020.130	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00067.212	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00119.114	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.167	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.141	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.182	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.38	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00095.18	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.203	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.9	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00055.66	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold03588.1	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold03314.1	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.571	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00166.36	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00068.1	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.63	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00221.6	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00338.1	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.376	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.434	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.135	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.175	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00087.47	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.6	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.244	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.136	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.219	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00225.2	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.235	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.12	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.12	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00148.38	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.180	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.198	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00028.94	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00154.17	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.381	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00068.22	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00062.187	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.339	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00162.9	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.90	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.290	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.397	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.48	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00036.166	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.28	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.190	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.15	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00141.5	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00067.127	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00067.212	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold01969.1	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00047.174	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.124	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.486	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00104.11	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold05394.1	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.183	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.456	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.227	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.350	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00070.95	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00070.108	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00122.76	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00095.2	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.51	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.41	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.295	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.179	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.76	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00032.270	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00064.97	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00052.29	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.19	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.231	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.219	5	NA	NA