Atr-MIR398a

Basic info.

• miRNA locus ID
• Atr-MIR398a

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold00102  1169837  1169979  +

• Comments
• A member of MIR398

• Confidence level
• 

Secondary structure and sequence

  AGAATG   A  T   AA    A     A  A          T           ATATTGTGTATGTGTGT
        GGG AG CTC  CAGG GCGAT TG GAACACACAA CATATGCATAA                 
        ||| || |||  |||| ||||| || |||||||||| |||||||||||                  
        CCC TC GAG  GTCC CGCTG AC CTTGTGTGTT CGTGCGTGTAC                 
TATCTATA   G  C   CC    C     G  C          -           GTGTACGTGTGCACGTG

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop sequence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

No miRNA locus in ± 10k bp interval.

Target gene info.[+]