Single miRNA

Atr-MIR399a

Basic info.

miRNA locus ID
Atr-MIR399a

Organism
Amborella trichopoda

Genomic location
AmTr_v1.0_scaffold00069 2597392 2597519 +

Comments
A member of MIR399

Confidence level

Secondary structure and sequence

mature sequence star sequence

5'

3'

TAA    -  -  -      T      TT      A       A -T    AACAAAATAATTCAG
   TGGG CA AA CCAGTT CAGGGC  CTCTCC TTGGCAG C  TGCA               
   |||| || || |||||| ||||||  |||||| ||||||| |  ||||               A
   ACCC GT TT GGTCAA GTCCCG  GAGAGG AACCGTC G  ACGT               
 CA    T  C  C      T      TT      A       C TT    CCATCTTACACTCAC

Get mature sequence
Get star sequence
Get miRNA stem-loop sequence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
evm_27.model.AmTr_v1.0_scaffold00053.87	2	NA	NA
evm_27.model.AmTr_v1.0_scaffold00032.70	2.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.234	2.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00189.4	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00067.218	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00071.104	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.92	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.287	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00030.88	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00088.7	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.397	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00091.13	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.109	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00105.58	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.51	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00053.36	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00011.58	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold05122.1	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold04600.1	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00078.156	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.129	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00106.71	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.485	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00197.6	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.131	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.54	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.310	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.175	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.80	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.23	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.85	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00034.85	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00105.26	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00155.51	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.34	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.38	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00169.14	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.71	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.44	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00072.49	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00053.47	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00032.91	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00062.127	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.125	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00034.7	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00060.117	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00035.22	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00271.2	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00034.63	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00118.20	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00166.7	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00148.44	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.172	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.99	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.206	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00071.209	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.10	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.99	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00035.59	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.217	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00078.46	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00078.48	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00038.98	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.280	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00176.32	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.76	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.73	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.27	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00026.74	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00080.76	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.127	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.216	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.47	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold04495.2	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.277	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00305.1	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00038.72	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.208	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.124	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.84	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.83	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.332	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.316	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00013.87	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00028.124	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00076.86	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00036.1	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00008.153	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.211	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.152	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00070.91	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00118.32	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00127.3	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.231	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.228	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.305	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.148	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.72	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.21	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00138.56	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.205	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00014.79	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00035.41	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00055.31	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.36	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.129	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00130.38	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.265	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.157	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.240	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.19	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00030.75	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00078.1	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.395	5	NA	NA