Single miRNA

Atr-MIR408a

Basic info.

miRNA locus ID
Atr-MIR408a

Organism
Amborella trichopoda

Genomic location
AmTr_v1.0_scaffold00045 1152310 1152435 -

Comments
A member of MIR408

Confidence level

Secondary structure and sequence

mature sequence star sequence

5'

3'

          A   TTT      AGG      T  A  T A           T  T  C  AACTCA
     AGAGA GTG   GAGAGC   CAGGGA GA GC G GCATGGGAGGG CA GA CA      
     ||||| |||   ||||||   |||||| || || | ||||||||||| || || ||       
     TCTCT TAT   CTCTCG   GTCCCT CT CG C CGTACTCTTCC GT CT GT      
TTCTC     C   TTC      ---      T  C  T A           T  T  C  CGTTCT

Get mature sequence
Get star sequence
Get miRNA stem-loop sequence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
evm_27.model.AmTr_v1.0_scaffold00001.235	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00092.72	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.38	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00147.29	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.10	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00067.218	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00008.134	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00079.34	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.4	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.166	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00008.76	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00068.18	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00140.39	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00088.20	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.268	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00077.189	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.285	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00137.19	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.86	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00030.69	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00090.82	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.27	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00095.86	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.135	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00062.46	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.434	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00119.4	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.24	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.262	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00085.96	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.228	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.266	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.261	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.543	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.418	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.88	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold04288.1	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.205	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00072.139	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.441	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.358	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00050.83	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.169	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.76	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.61	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.393	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.391	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.192	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.271	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00099.153	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00136.37	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00097.48	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00078.58	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00180.31	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.50	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.187	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.219	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.30	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.462	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.90	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.145	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00100.8	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.47	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.136	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.61	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00076.24	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.531	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00092.72	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.401	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.108	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00092.144	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.198	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.335	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.25	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00079.34	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00085.65	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.343	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00096.100	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.278	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.139	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.76	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.305	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.256	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.131	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.7	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.127	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.37	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.94	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.175	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.148	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00036.170	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.67	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00137.26	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.356	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00101.46	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00064.106	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00050.103	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.79	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00099.72	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.16	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00153.28	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00128.43	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.47	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00046.65	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.166	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00073.21	5	NA	NA