Single miRNA

Atr-MIR477a

Basic info.

miRNA locus ID
Atr-MIR477a

Organism
Amborella trichopoda

Genomic location
AmTr_v1.0_scaffold00003 709706 709814 +

Comments
A member of MIR477

Confidence level

Secondary structure and sequence

mature sequence star sequence

5'

3'

  TT            ATC            CA          G     --    TT
    TCAGGGCACCTA   TTCACTCTCCCT  AGGGCTTCTG TCCTT  ACCA  
    ||||||||||||   ||||||||||||  |||||||||| |||||  ||||   
    GGTTTTGTGGAT   AGGTGAGAGGGG  TTCCGGAGAT AGGAG  TGGT  
CTTT            CGT            -A          A     AA    AC

Get mature sequence
Get star sequence
Get miRNA stem-loop sequence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
evm_27.model.AmTr_v1.0_scaffold00089.46	2.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.131	2.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00107.16	2.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold01818.1	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00018.102	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00113.3	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.155	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00140.34	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.265	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.219	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00076.4	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00047.101	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00079.69	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00092.30	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.63	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.65	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.95	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.32	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00032.225	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.243	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.201	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00130.65	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00005.137	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00268.7	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00050.51	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.357	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00110.124	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00071.9	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.188	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00070.54	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00051.72	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.92	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.166	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.379	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.38	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00082.13	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00101.80	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.151	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00060.105	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00055.175	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00042.76	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00111.60	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.153	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00138.8	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00105.78	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.233	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00023.205	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00193.2	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.132	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00060.144	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.132	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00111.51	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00063.17	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00151.30	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.196	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold01299.1	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold03266.1	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00036.162	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00067.2	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00794.1	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00036.14	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00114.59	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00011.217	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00129.25	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00112.39	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00014.75	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.5	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00027.8	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00088.65	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00078.76	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.56	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00008.36	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00340.3	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00018.75	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.317	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00047.75	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00072.69	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00036.169	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00155.45	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.282	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00060.37	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00013.238	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00171.32	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.87	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00099.67	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.13	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.215	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.511	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00068.90	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.131	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.390	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.377	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00023.57	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00080.29	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.42	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00070.99	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00094.15	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00011.163	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.65	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.132	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00008.76	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.25	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.105	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00827.1	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.36	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00097.48	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00026.34	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00038.112	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.163	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.65	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00014.13	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.197	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00032.80	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00013.181	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.121	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00264.2	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.128	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00051.41	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.17	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.68	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00092.113	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.488	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00284.1	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00060.120	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00085.57	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.83	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00287.3	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00106.9	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.41	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.254	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.111	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.362	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.177	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.249	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00072.53	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.169	5	NA	NA