Single miRNA

Atr-MIR477b

Basic info.

miRNA locus ID
Atr-MIR477b

Organism
Amborella trichopoda

Genomic location
AmTr_v1.0_scaffold00003 741318 741423 +

Comments
A member of MIR477

Confidence level

Secondary structure and sequence

mature sequence star sequence

5'

3'

  TTTCATGGCACCTCACC          CT                  GGCTT
                   TTCACTCTCC  CAAGGGCTTCTGATCCTT     
                   ||||||||||  ||||||||||||||||||     T
                   AGGTGAGAGG  GTTTCCGAAGATTAGGAG     
CTTCCGTTTCGTTGAACGT          -T                  GATAC

Get mature sequence
Get star sequence
Get miRNA stem-loop sequence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
evm_27.model.AmTr_v1.0_scaffold00002.195	2	NA	NA
evm_27.model.AmTr_v1.0_scaffold00026.111	2	NA	NA
evm_27.model.AmTr_v1.0_scaffold00026.118	2	NA	NA
evm_27.model.AmTr_v1.0_scaffold00026.113	2	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.123	2.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00079.122	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.33	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00217.10	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.279	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.95	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00079.112	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00164.18	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.133	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00026.115	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.66	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00079.74	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.195	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.27	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00080.51	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.73	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00114.42	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.41	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.190	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.102	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.340	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00120.33	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.214	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00154.50	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.140	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.106	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00014.47	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.209	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00011.82	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00032.157	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00149.37	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.401	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.122	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00077.205	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00072.134	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.7	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00175.6	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.267	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.155	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00070.63	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.192	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00011.51	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00062.174	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00023.41	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00037.156	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00018.31	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00090.94	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00152.29	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00101.107	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.285	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00136.30	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.255	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.490	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.401	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.36	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.36	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.9	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00052.11	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00008.118	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.326	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.292	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00038.229	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00043.86	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00081.49	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00062.134	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.367	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00088.108	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00079.112	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00018.171	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.162	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.7	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00177.5	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00120.33	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.95	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.462	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00018.28	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00018.28	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.136	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.184	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.297	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.324	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.113	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.69	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00011.114	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00062.123	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00081.39	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00062.122	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.141	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00053.158	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.455	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.562	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.9	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.38	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00088.92	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00067.185	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.410	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00079.127	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00175.27	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00013.37	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.327	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00027.102	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.5	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00018.3	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.130	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.319	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.189	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00116.18	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.367	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00018.149	5	NA	NA