Single miRNA

Atr-MIR477c

Basic info.

miRNA locus ID
Atr-MIR477c

Organism
Amborella trichopoda

Genomic location
AmTr_v1.0_scaffold00003 787275 787385 +

Comments
A member of MIR477

Confidence level

Secondary structure and sequence

mature sequence star sequence

5'

3'

  TTTC            CTT         T          TCG      A   TT
      AGGGCACCTAAT   CACTCTCCC CAATGGCTTC   TCCTTT CCT  
      ||||||||||||   ||||||||| ||||||||||   |||||| |||  C
      TTTTGTGGATTA   GTGGGAGGG GTTGCCGGAG   AGGAGG GGG  
CTTCCG            TAC         T          CTA      A   TA

Get mature sequence
Get star sequence
Get miRNA stem-loop sequence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
evm_27.model.AmTr_v1.0_scaffold00002.195	0.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.195	2.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.7	2.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00023.219	2.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.340	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.9	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00046.167	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.335	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.562	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00146.23	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00085.52	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00062.122	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00088.39	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00062.123	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00026.36	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00026.118	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00026.113	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00026.111	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00005.10	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00153.14	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00031.99	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.167	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00008.240	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00018.75	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00110.32	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00047.47	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.58	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.176	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00076.76	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00217.10	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00038.226	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.270	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00182.11	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.33	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.645	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00067.39	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.151	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00079.122	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00136.40	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.38	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.383	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.204	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.227	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.228	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00076.31	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00096.20	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00092.103	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.95	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.114	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00146.66	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.190	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00075.12	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00201.6	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00005.17	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.665	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00034.17	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.37	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00150.6	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.159	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00174.3	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.51	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00181.2	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00023.204	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00090.82	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.279	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.242	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.133	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00148.24	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.180	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.52	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.196	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.131	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00079.112	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00089.54	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00138.45	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00074.8	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.247	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00060.36	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00099.115	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.6	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00036.143	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00161.9	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00023.155	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.73	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.133	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00036.102	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.110	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.92	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00043.28	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00165.11	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.176	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.250	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00053.28	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.266	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00013.168	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00060.64	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00015.64	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00015.64	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.210	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00148.23	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.169	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.514	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00148.30	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00067.94	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00079.50	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.268	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00033.176	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00008.76	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.88	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00154.50	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.158	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00106.85	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.234	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00027.77	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00149.29	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.105	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.27	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.231	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.74	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.303	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.262	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.42	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00080.51	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00013.112	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00122.63	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00149.25	5	NA	NA