Single miRNA

Atr-MIR529a

Basic info.

miRNA locus ID
Atr-MIR529a

Organism
Amborella trichopoda

Genomic location
AmTr_v1.0_scaffold00021 6061232 6061422 +

Comments
A member of MIR529

Confidence level

Secondary structure and sequence

mature sequence star sequence

5'

3'

             GTGTTCA  GAGACTACTGGAGAAGAGAGAGAGCACAGCTCTTTGTGAGAACACACATACACACACATGCACAGCTCGTATAGGAGTGA
                    AG                                                                                
                    ||                                                                                 
                    CC                                                                                
ATTCTACCACCCCCAGATCA  TCTTCTCTCTATCGTGTCGAGGACACACTCTTTGGAAATAAGTACCCCGCCCCGCCCCGCCCCGCACAAGTACCACACAA

Get mature sequence
Get star sequence
Get miRNA stem-loop sequence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
evm_27.model.AmTr_v1.0_scaffold00032.173	2	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.83	2	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.151	2	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.62	2.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.426	2.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00128.19	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.147	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.214	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00068.110	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00011.131	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.208	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.151	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00174.3	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00181.2	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00111.93	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.636	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.236	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00011.147	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.308	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00011.33	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00088.10	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00075.40	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00055.173	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00235.2	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.634	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00165.27	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.162	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.44	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00071.91	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.388	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00102.9	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.292	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.191	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.167	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.232	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.279	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00125.6	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00060.110	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.70	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00013.210	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold02925.1	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.72	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold01831.1	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.333	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00099.148	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00028.141	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.434	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00060.84	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00171.9	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00071.195	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.263	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.168	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00011.233	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00111.18	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.328	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.295	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00005.204	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00092.137	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00030.113	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00075.40	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.110	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00020.116	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.22	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.281	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00031.93	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.215	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.147	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00031.94	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.145	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00200.7	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00090.112	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00023.187	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00008.60	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00060.115	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00103.43	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.81	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00109.7	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.176	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00109.11	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00109.11	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.252	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.75	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.1	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.27	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00027.141	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.401	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00040.28	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.427	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00111.112	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00155.19	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.72	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00063.36	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.351	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00088.10	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00135.46	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.77	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00075.40	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00078.155	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.251	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00060.6	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00032.116	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00032.116	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00137.36	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.351	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.33	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00157.17	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.322	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.343	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.444	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00067.76	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00235.7	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00076.28	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.145	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.412	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00088.42	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00008.60	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00008.157	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.20	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00041.93	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.16	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00047.167	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00122.76	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.118	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00140.53	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.434	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00068.133	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.234	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00077.210	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.527	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.314	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.314	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00055.31	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.69	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.169	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.187	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.187	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.187	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.216	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00037.58	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.224	5	NA	NA