Atr-MIR8558a

Basic info.

• miRNA locus ID
• Atr-MIR8558a

• Organism
• Amborella trichopoda

• Genomic location
• AmTr_v1.0_scaffold00017  2879806  2879998  +

• Comments
• A member of MIR8558

• Confidence level
• 

Secondary structure and sequence

  T    T      T          -     AGAAT        --   --    ---   -      ACGGGAAACCAGGATTAGGAAACTCTAATTTTGG
   ATGG AGCCGT GGTGTATGGC TGGGC     TTGGAAAC  CCT  AGTT   TTG GTTTTT                                  
   |||| |||||| |||||||||| |||||     ||||||||  |||  ||||   ||| ||||||                                  C
   TATC TCGGTA CCATGTGCCG ACCCG     AGCCTTTG  ACC  AGGA   TCT TGGGTT                                  
CCC    T      C          T     -CCCT        GT   AA    CAT   G      TAATCCAAGAGGATTATGACCTAAAGGCCATTCT

• Get mature sequence
• Get star sequence
• Get miRNA stem-loop sequence
• Get miRNA stem-loop ± 20bp
• Get dot-bracket miRNA secondary structure

miRNA cluster info.

• Cluster ID: 
• Chromosome: 
• Cluster start: 
• Cluster end: 

No miRNA locus in ± 10k bp interval.

Target gene info.[+]