Single miRNA

Atr-MIR8558b

Basic info.

miRNA locus ID
Atr-MIR8558b

Organism
Amborella trichopoda

Genomic location
AmTr_v1.0_scaffold00017 2901056 2901167 +

Comments
A member of MIR8558

Confidence level

Secondary structure and sequence

mature sequence star sequence

5'

3'

  T    T          T G    -           A       GGCTT    ATTC
   GTGG AGCCGGGGGT T AGGT TGGGCGGGTTC GGAAGGC     TTAT    
   |||| |||||||||| | |||| ||||||||||| |||||||     ||||     
   TATC TCGGCCTTCA A TCCA ATCCGCCTAAG CCTTTCG     AATG    
CCC    T          T G    T           -       ATCCC    ATTA

Get mature sequence
Get star sequence
Get miRNA stem-loop sequence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
evm_27.model.AmTr_v1.0_scaffold00080.56	2	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.295	2.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00088.121	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00138.47	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00174.36	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00104.11	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00071.160	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.98	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00030.173	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00153.13	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00043.10	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.166	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00023.160	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.358	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00085.108	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.199	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00027.113	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00004.52	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.291	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.419	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.288	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.32	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00053.139	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.212	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.148	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00058.52	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.49	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00096.64	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00039.209	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.162	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00067.147	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00077.136	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00104.13	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.29	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.18	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.12	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.143	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.258	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00136.40	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.212	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.173	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.266	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00013.50	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00110.130	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00032.54	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.224	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.229	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00030.120	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.86	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00036.113	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00013.31	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00037.128	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00106.129	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.368	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.185	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.56	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00136.4	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.119	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.167	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.6	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00101.20	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00034.125	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00067.115	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00067.60	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.355	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.334	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.335	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00085.87	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00119.85	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00154.46	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00079.101	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00047.139	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00037.131	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.105	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.362	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00128.5	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00013.31	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00062.82	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.170	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00180.17	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.201	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.22	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00085.63	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.321	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.141	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00190.11	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00068.127	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00063.23	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.178	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00021.287	5	NA	NA