Single miRNA

Atr-MIR8578a

Basic info.

miRNA locus ID
Atr-MIR8578a

Organism
Amborella trichopoda

Genomic location
AmTr_v1.0_scaffold00036 3264755 3264878 +

Comments
A member of MIR8578

Confidence level

Secondary structure and sequence

mature sequence star sequence

5'

3'

  GAAAGATGCTGTAAAA      T         C                 AT      ATT
                  AATCTT ATGAGTGAT TTTGCAATAGTTTCCTT  GGAAAT   
                  |||||| ||||||||| |||||||||||||||||  ||||||    
                  TTAGAA TACTCACTG AAGCGTTATCAGAGGAA  TTTTTG   
GTTGGATGAGAGTAATAA      T         T                 GG      GTG

Get mature sequence
Get star sequence
Get miRNA stem-loop sequence
Get miRNA stem-loop ± 20bp
Get dot-bracket miRNA secondary structure

miRNA cluster info.

Cluster ID:
Chromosome:
Cluster start:
Cluster end:

No miRNA locus in ± 10k bp interval.

Target gene info.[+]

Target gene ID	psRNAtarget	RNAhybrid	PARE-Seq? The first number (from 0-2) indicates the category of CleaveLand4 analysis result while the number in brackets displays the number of degradome libraries which verify the miRNA-target interaction. Click the number to download the selected figure of PARE-Seq reads distribution.
evm_27.model.AmTr_v1.0_scaffold00109.130	0.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00056.119	1.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00085.80	2.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.586	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.254	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00055.75	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00088.84	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00106.122	3	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.48	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00022.44	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00164.15	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00078.118	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00038.161	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.177	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00154.9	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00109.150	3.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.165	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00078.32	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00131.82	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.194	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.475	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.207	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.191	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00096.66	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.199	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00202.7	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00118.13	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00122.29	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.116	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00044.103	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.430	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.314	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.175	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00055.65	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.414	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00023.64	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00188.9	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00085.99	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.289	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00072.87	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.174	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.362	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.362	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.41	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00114.69	4	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.123	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00109.105	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00627.1	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.132	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00066.251	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00091.23	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00046.82	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00028.138	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00075.19	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.229	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00106.125	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00043.92	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00092.132	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.175	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.284	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.285	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.65	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00106.110	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold01214.1	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00053.41	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.159	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00071.9	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00023.119	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00017.235	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00085.83	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00101.118	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.47	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00042.26	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00078.112	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.55	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.8	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.231	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.91	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00146.32	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00106.86	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.222	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00077.24	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.541	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00071.20	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00055.133	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.130	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00095.96	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00049.41	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00252.2	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00005.84	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.21	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.177	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00046.103	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00025.148	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00067.205	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.213	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.223	4.5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00111.52	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00009.41	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00166.36	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00053.41	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00015.54	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00157.51	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.293	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00095.85	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00069.68	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00061.84	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00124.1	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00054.63	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00045.35	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.50	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.43	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00160.29	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00042.26	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00007.32	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00113.16	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.254	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00057.249	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00048.200	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00016.141	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00012.327	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00055.149	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00013.39	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.382	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00019.317	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00001.88	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.467	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00024.123	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.462	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00006.320	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.28	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00059.28	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00047.104	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00029.362	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00002.541	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00065.130	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00003.321	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00036.119	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00010.131	5	NA	NA
evm_27.model.AmTr_v1.0_scaffold00014.75	5	NA	NA